Analysis of interatomic Contacts of Structural Units in PDB entry:
5U03

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U03 entry

There are 4 chains in PDB entry 5U03 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	CYS 559
B	MET 1	CYS 559
C	MET 1	CYS 559
D	MET 1	CYS 559

There are104 helices in PDB entry 5U03. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	31	Right-handed alpha
Helix 2	AA2	A	46	50	Right-handed 310
Helix 3	AA3	A	69	78	Right-handed alpha
Helix 4	AA4	A	83	85	Right-handed 310
Helix 5	AA5	A	90	104	Right-handed alpha
Helix 6	AA6	A	115	130	Right-handed alpha
Helix 7	AA7	A	153	155	Right-handed 310
Helix 8	AA8	A	156	170	Right-handed alpha
Helix 9	AA9	A	171	173	Right-handed 310
Helix 10	AB1	A	194	208	Right-handed alpha
Helix 11	AB2	A	223	235	Right-handed alpha
Helix 12	AB3	A	249	251	Right-handed 310
Helix 13	AB4	A	252	261	Right-handed alpha
Helix 14	AB5	A	261	270	Right-handed alpha
Helix 15	AB6	A	283	294	Right-handed alpha
Helix 16	AB7	A	314	329	Right-handed alpha
Helix 17	AB8	A	340	342	Right-handed 310
Helix 18	AB9	A	343	350	Right-handed alpha
Helix 19	AC1	A	350	364	Right-handed alpha
Helix 20	AC2	A	377	392	Right-handed alpha
Helix 21	AC3	A	399	414	Right-handed alpha
Helix 22	AC4	A	462	469	Right-handed alpha
Helix 23	AC5	A	485	493	Right-handed alpha
Helix 24	AC6	A	526	530	Right-handed 310
Helix 25	AC7	A	537	549	Right-handed alpha
Helix 26	AC8	A	550	558	Right-handed alpha
Helix 27	AC9	B	15	31	Right-handed alpha
Helix 28	AD1	B	46	50	Right-handed 310
Helix 29	AD2	B	69	78	Right-handed alpha
Helix 30	AD3	B	83	85	Right-handed 310
Helix 31	AD4	B	90	104	Right-handed alpha
Helix 32	AD5	B	115	130	Right-handed alpha
Helix 33	AD6	B	153	155	Right-handed 310
Helix 34	AD7	B	156	170	Right-handed alpha
Helix 35	AD8	B	171	173	Right-handed 310
Helix 36	AD9	B	194	208	Right-handed alpha
Helix 37	AE1	B	223	235	Right-handed alpha
Helix 38	AE2	B	249	251	Right-handed 310
Helix 39	AE3	B	252	261	Right-handed alpha
Helix 40	AE4	B	261	270	Right-handed alpha
Helix 41	AE5	B	283	294	Right-handed alpha
Helix 42	AE6	B	314	329	Right-handed alpha
Helix 43	AE7	B	340	342	Right-handed 310
Helix 44	AE8	B	343	350	Right-handed alpha
Helix 45	AE9	B	350	364	Right-handed alpha
Helix 46	AF1	B	377	392	Right-handed alpha
Helix 47	AF2	B	399	414	Right-handed alpha
Helix 48	AF3	B	462	469	Right-handed alpha
Helix 49	AF4	B	485	493	Right-handed alpha
Helix 50	AF5	B	526	530	Right-handed 310
Helix 51	AF6	B	537	549	Right-handed alpha
Helix 52	AF7	B	550	558	Right-handed alpha
Helix 53	AF8	C	15	31	Right-handed alpha
Helix 54	AF9	C	46	50	Right-handed 310
Helix 55	AG1	C	69	78	Right-handed alpha
Helix 56	AG2	C	83	85	Right-handed 310
Helix 57	AG3	C	90	104	Right-handed alpha
Helix 58	AG4	C	115	130	Right-handed alpha
Helix 59	AG5	C	153	155	Right-handed 310
Helix 60	AG6	C	156	170	Right-handed alpha
Helix 61	AG7	C	171	173	Right-handed 310
Helix 62	AG8	C	194	208	Right-handed alpha
Helix 63	AG9	C	223	235	Right-handed alpha
Helix 64	AH1	C	249	251	Right-handed 310
Helix 65	AH2	C	252	261	Right-handed alpha
Helix 66	AH3	C	261	270	Right-handed alpha
Helix 67	AH4	C	283	294	Right-handed alpha
Helix 68	AH5	C	314	329	Right-handed alpha
Helix 69	AH6	C	340	342	Right-handed 310
Helix 70	AH7	C	343	350	Right-handed alpha
Helix 71	AH8	C	350	364	Right-handed alpha
Helix 72	AH9	C	377	392	Right-handed alpha
Helix 73	AI1	C	399	414	Right-handed alpha
Helix 74	AI2	C	462	469	Right-handed alpha
Helix 75	AI3	C	485	493	Right-handed alpha
Helix 76	AI4	C	526	530	Right-handed 310
Helix 77	AI5	C	537	549	Right-handed alpha
Helix 78	AI6	C	550	558	Right-handed alpha
Helix 79	AI7	D	15	31	Right-handed alpha
Helix 80	AI8	D	46	50	Right-handed 310
Helix 81	AI9	D	69	78	Right-handed alpha
Helix 82	AJ1	D	83	85	Right-handed 310
Helix 83	AJ2	D	90	104	Right-handed alpha
Helix 84	AJ3	D	115	130	Right-handed alpha
Helix 85	AJ4	D	153	155	Right-handed 310
Helix 86	AJ5	D	156	170	Right-handed alpha
Helix 87	AJ6	D	171	173	Right-handed 310
Helix 88	AJ7	D	194	208	Right-handed alpha
Helix 89	AJ8	D	223	235	Right-handed alpha
Helix 90	AJ9	D	249	251	Right-handed 310
Helix 91	AK1	D	252	261	Right-handed alpha
Helix 92	AK2	D	261	270	Right-handed alpha
Helix 93	AK3	D	283	294	Right-handed alpha
Helix 94	AK4	D	314	329	Right-handed alpha
Helix 95	AK5	D	340	342	Right-handed 310
Helix 96	AK6	D	343	350	Right-handed alpha
Helix 97	AK7	D	350	364	Right-handed alpha
Helix 98	AK8	D	377	392	Right-handed alpha
Helix 99	AK9	D	399	414	Right-handed alpha
Helix 100	AL1	D	462	469	Right-handed alpha
Helix 101	AL2	D	485	493	Right-handed alpha
Helix 102	AL3	D	526	530	Right-handed 310
Helix 103	AL4	D	537	549	Right-handed alpha
Helix 104	AL5	D	550	558	Right-handed alpha

There are 16 sheets in PDB entry 5U03. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	34	40	parallel
Strand 3	A	142	147	parallel
Strand 4	A	2	8	parallel
Strand 5	A	175	182	parallel
Strand 6	A	213	218	parallel
Strand 7	A	241	245	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	66	68	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	338	first strand
Strand 2	A	298	305	parallel
Strand 3	A	366	369	parallel
Strand 4	A	395	398	parallel
Strand 5	A	520	523	parallel
Strand 6	A	509	514	anti-parallel
Strand 7	A	497	503	anti-parallel
Strand 8	A	449	457	anti-parallel
Strand 9	A	473	480	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	421	first strand
Strand 2	A	430	435	parallel
Strand 3	A	482	484	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	34	40	parallel
Strand 3	B	142	147	parallel
Strand 4	B	2	8	parallel
Strand 5	B	175	182	parallel
Strand 6	B	213	218	parallel
Strand 7	B	241	245	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	66	68	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	338	first strand
Strand 2	B	298	305	parallel
Strand 3	B	366	369	parallel
Strand 4	B	395	398	parallel
Strand 5	B	520	523	parallel
Strand 6	B	509	514	anti-parallel
Strand 7	B	497	503	anti-parallel
Strand 8	B	449	457	anti-parallel
Strand 9	B	473	480	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	421	first strand
Strand 2	B	430	435	parallel
Strand 3	B	482	484	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	34	40	parallel
Strand 3	C	142	147	parallel
Strand 4	C	2	8	parallel
Strand 5	C	175	182	parallel
Strand 6	C	213	218	parallel
Strand 7	C	241	245	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	66	68	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	338	first strand
Strand 2	C	298	305	parallel
Strand 3	C	366	369	parallel
Strand 4	C	395	398	parallel
Strand 5	C	520	523	parallel
Strand 6	C	509	514	anti-parallel
Strand 7	C	497	503	anti-parallel
Strand 8	C	449	457	anti-parallel
Strand 9	C	473	480	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	421	first strand
Strand 2	C	430	435	parallel
Strand 3	C	482	484	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	34	40	parallel
Strand 3	D	142	147	parallel
Strand 4	D	2	8	parallel
Strand 5	D	175	182	parallel
Strand 6	D	213	218	parallel
Strand 7	D	241	245	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	66	68	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	338	first strand
Strand 2	D	298	305	parallel
Strand 3	D	366	369	parallel
Strand 4	D	395	398	parallel
Strand 5	D	520	523	parallel
Strand 6	D	509	514	anti-parallel
Strand 7	D	497	503	anti-parallel
Strand 8	D	449	457	anti-parallel
Strand 9	D	473	480	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	421	first strand
Strand 2	D	430	435	parallel
Strand 3	D	482	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U03

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U03