Analysis of interatomic Contacts of Structural Units in PDB entry:
5U06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U06 entry

There are 12 chains in PDB entry 5U06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 426LEU 532
B
 ARG 427THR 528
C
 ALA 423VAL 530
D
 ILE 425ARG 529
L
 LYS 1GLY 4
L
 ASP 6GLU 8
M
 LYS 1GLY 4
M
 ASP 6GLU 8
N
 LYS 1GLY 4
N
 ASP 6GLU 8
P
 LYS 1GLY 4
P
 ASP 6GLU 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5U06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
437 449Right-handed alpha
Helix 2
AA2
A
504 513Right-handed alpha
Helix 3
AA3
B
437 448Right-handed alpha
Helix 4
AA4
B
504 513Right-handed alpha
Helix 5
AA5
C
425 429Right-handed 310
Helix 6
AA6
C
437 448Right-handed alpha
Helix 7
AA7
C
504 513Right-handed alpha
Helix 8
AA8
D
437 448Right-handed alpha
Helix 9
AA9
D
504 513Right-handed alpha
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There are 4 sheets in PDB entry 5U06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 494first strand
Strand 2
A
476 487anti-parallel
Strand 3
A
467 473anti-parallel
Strand 4
A
454 459anti-parallel
Strand 5
A
525 526parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
501 502first strand
Strand 2
B
490 494anti-parallel
Strand 3
B
476 487anti-parallel
Strand 4
B
467 473anti-parallel
Strand 5
B
454 459anti-parallel
Strand 6
B
525 526parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
501 502first strand
Strand 2
C
490 494anti-parallel
Strand 3
C
476 487anti-parallel
Strand 4
C
467 473anti-parallel
Strand 5
C
454 459anti-parallel
Strand 6
C
525 526parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
492 494first strand
Strand 2
D
476 485anti-parallel
Strand 3
D
467 473anti-parallel
Strand 4
D
454 459anti-parallel
Strand 5
D
525 526parallel
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