Analysis of interatomic Contacts of Structural Units in PDB entry:
5U09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U09 entry

There is 1 chain in PDB entry 5U09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 100PHE 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5U09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 108Right-handed 310
Helix 2
AA2
A
112 144Right-handed alpha
Helix 3
AA3
A
144 149Right-handed alpha
Helix 4
AA4
A
150 152Right-handed 310
Helix 5
AA5
A
153 179Right-handed alpha
Helix 6
AA6
A
185 220Right-handed alpha
Helix 7
AA7
A
223 228Right-handed alpha
Helix 8
AA8
A
229 250Right-handed alpha
Helix 9
AA9
A
251 254Right-handed 310
Helix 10
AB1
A
256 261Right-handed alpha
Helix 11
AB2
A
272 301Right-handed alpha
Helix 12
AB3
A
1008 1012Right-handed 310
Helix 13
AB4
A
1015 1027Right-handed alpha
Helix 14
AB5
A
1047 1060Right-handed alpha
Helix 15
AB6
A
1061 1065Right-handed 310
Helix 16
AB7
A
1076 1090Right-handed alpha
Helix 17
AB8
A
1101 1110Right-handed alpha
Helix 18
AB9
A
1125 1134Right-handed alpha
Helix 19
AC1
A
1145 1150Right-handed alpha
Helix 20
AC2
A
1162 1177Right-handed alpha
Helix 21
AC3
A
1181 368Right-handed alpha
Helix 22
AC4
A
374 401Right-handed alpha
Helix 23
AC5
A
401 410Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5U09.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1093 1096first strand
Strand 2
A
1067 1072parallel
Strand 3
A
1033 1038parallel
Strand 4
A
1114 1117parallel
Strand 5
A
1137 1141parallel
Strand 6
A
1156 1158parallel
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