Analysis of interatomic Contacts of Structural Units in PDB entry:
5U0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U0M entry

There are 2 chains in PDB entry 5U0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	PHE 490
B	LEU 4	PHE 490

There are 29 helices in PDB entry 5U0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	59	Right-handed alpha
Helix 2	AA2	A	62	80	Right-handed alpha
Helix 3	AA3	A	80	93	Right-handed alpha
Helix 4	AA4	A	95	121	Right-handed alpha
Helix 5	AA5	A	153	166	Right-handed alpha
Helix 6	AA6	A	178	191	Right-handed alpha
Helix 7	AA7	A	205	215	Right-handed alpha
Helix 8	AA8	A	226	237	Right-handed alpha
Helix 9	AA9	A	262	276	Right-handed alpha
Helix 10	AB1	A	277	280	Right-handed 310
Helix 11	AB2	A	293	309	Right-handed alpha
Helix 12	AB3	A	328	344	Right-handed alpha
Helix 13	AB4	A	392	401	Right-handed alpha
Helix 14	AB5	A	415	426	Right-handed alpha
Helix 15	AB6	A	461	466	Right-handed alpha
Helix 16	AB7	B	40	59	Right-handed alpha
Helix 17	AB8	B	62	80	Right-handed alpha
Helix 18	AB9	B	80	93	Right-handed alpha
Helix 19	AC1	B	95	121	Right-handed alpha
Helix 20	AC2	B	153	166	Right-handed alpha
Helix 21	AC3	B	178	191	Right-handed alpha
Helix 22	AC4	B	205	214	Right-handed alpha
Helix 23	AC5	B	226	237	Right-handed alpha
Helix 24	AC6	B	262	280	Right-handed alpha
Helix 25	AC7	B	293	309	Right-handed alpha
Helix 26	AC8	B	328	344	Right-handed alpha
Helix 27	AC9	B	392	401	Right-handed alpha
Helix 28	AD1	B	415	426	Right-handed alpha
Helix 29	AD2	B	461	466	Right-handed alpha

There are 14 sheets in PDB entry 5U0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	13	15	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	25	first strand
Strand 2	A	32	37	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	128	first strand
Strand 2	A	131	139	anti-parallel
Strand 3	A	467	474	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	169	173	parallel
Strand 3	A	142	146	parallel
Strand 4	A	220	224	parallel
Strand 5	A	244	248	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	366	369	anti-parallel
Strand 3	A	384	390	parallel
Strand 4	A	285	291	parallel
Strand 5	A	253	257	parallel
Strand 6	A	408	412	parallel
Strand 7	A	430	433	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	449	450	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	458	459	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	13	15	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	25	first strand
Strand 2	B	32	37	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	128	first strand
Strand 2	B	131	139	anti-parallel
Strand 3	B	467	474	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	169	173	parallel
Strand 3	B	142	146	parallel
Strand 4	B	220	224	parallel
Strand 5	B	244	248	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	366	369	anti-parallel
Strand 3	B	384	390	parallel
Strand 4	B	285	291	parallel
Strand 5	B	253	257	parallel
Strand 6	B	408	412	parallel
Strand 7	B	430	433	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	449	450	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	458	459	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U0M