Analysis of interatomic Contacts of Structural Units in PDB entry:
5U0P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U0P entry

There are 16 chains in PDB entry 5U0P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	PHE 86	UNK 901
F	ASP 10	VAL 215
H	ASP 3	ARG 200
Q	ASP 8	THR 544
R	MET 1	LEU 207
T	PRO 2	SER 190
K	SER 15	ILE 112
V	SER 5	PRO 122
D	UNK 6	UNK 106
G	SER 11	PRO 341
U	MET 1	PRO 138
3	GLU 2	TRP 104
I	THR 47	THR 121
2	MET 1	PHE 136
S	UNK 71	UNK 401
J	UNK 1	UNK 342

There are115 helices in PDB entry 5U0P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	N	87	93	Right-handed alpha
Helix 2	AA2	N	105	119	Right-handed alpha
Helix 3	AA3	N	126	132	Right-handed alpha
Helix 4	AA4	N	152	172	Right-handed alpha
Helix 5	AA5	N	233	254	Right-handed alpha
Helix 6	AA6	N	259	288	Right-handed alpha
Helix 7	AA7	N	337	342	Right-handed alpha
Helix 8	AA8	N	378	402	Right-handed alpha
Helix 9	AA9	N	448	453	Right-handed alpha
Helix 10	AB1	N	453	459	Right-handed alpha
Helix 11	AB2	N	465	484	Right-handed alpha
Helix 12	AB3	N	550	576	Right-handed alpha
Helix 13	AB4	N	884	900	Right-handed alpha
Helix 14	AB5	F	18	25	Right-handed alpha
Helix 15	AB6	F	30	40	Right-handed alpha
Helix 16	AB7	F	47	59	Right-handed alpha
Helix 17	AB8	F	66	71	Right-handed alpha
Helix 18	AB9	F	120	142	Right-handed alpha
Helix 19	AC1	F	198	211	Right-handed alpha
Helix 20	AC2	H	4	37	Right-handed alpha
Helix 21	AC3	H	42	65	Right-handed alpha
Helix 22	AC4	H	66	74	Right-handed alpha
Helix 23	AC5	H	87	95	Right-handed alpha
Helix 24	AC6	H	100	121	Right-handed alpha
Helix 25	AC7	H	126	151	Right-handed alpha
Helix 26	AC8	H	172	198	Right-handed alpha
Helix 27	AC9	Q	8	12	Right-handed 310
Helix 28	AD1	Q	13	19	Right-handed alpha
Helix 29	AD2	Q	29	39	Right-handed alpha
Helix 30	AD3	Q	44	59	Right-handed alpha
Helix 31	AD4	Q	60	65	Right-handed alpha
Helix 32	AD5	Q	72	76	Right-handed 310
Helix 33	AD6	Q	77	91	Right-handed alpha
Helix 34	AD7	Q	92	95	Right-handed 310
Helix 35	AD8	Q	102	131	Right-handed alpha
Helix 36	AD9	Q	137	141	Right-handed 310
Helix 37	AE1	Q	142	147	Right-handed alpha
Helix 38	AE2	Q	165	214	Right-handed alpha
Helix 39	AE3	Q	292	321	Right-handed alpha
Helix 40	AE4	Q	322	325	Right-handed 310
Helix 41	AE5	Q	377	404	Right-handed alpha
Helix 42	AE6	Q	409	414	Right-handed alpha
Helix 43	AE7	Q	425	447	Right-handed alpha
Helix 44	AE8	Q	458	462	Right-handed 310
Helix 45	AE9	Q	465	473	Right-handed alpha
Helix 46	AF1	Q	522	543	Right-handed alpha
Helix 47	AF2	R	14	24	Right-handed alpha
Helix 48	AF3	R	71	76	Right-handed alpha
Helix 49	AF4	R	110	116	Right-handed alpha
Helix 50	AF5	R	178	197	Right-handed alpha
Helix 51	AF6	R	198	200	Right-handed 310
Helix 52	AF7	T	14	22	Right-handed alpha
Helix 53	AF8	T	79	87	Right-handed alpha
Helix 54	AF9	T	135	138	Right-handed 310
Helix 55	AG1	T	139	146	Right-handed alpha
Helix 56	AG2	T	175	186	Right-handed alpha
Helix 57	AG3	T	187	189	Right-handed 310
Helix 58	AG4	K	17	29	Right-handed alpha
Helix 59	AG5	K	29	47	Right-handed alpha
Helix 60	AG6	K	50	82	Right-handed alpha
Helix 61	AG7	K	97	111	Right-handed alpha
Helix 62	AG8	V	6	39	Right-handed alpha
Helix 63	AG9	V	45	83	Right-handed alpha
Helix 64	AH1	V	100	112	Right-handed alpha
Helix 65	AH2	D	7	27	Right-handed alpha
Helix 66	AH3	D	34	40	Right-handed alpha
Helix 67	AH4	D	40	87	Right-handed alpha
Helix 68	AH5	D	92	101	Right-handed alpha
Helix 69	AH6	G	18	23	Right-handed 310
Helix 70	AH7	G	24	38	Right-handed alpha
Helix 71	AH8	G	59	64	Right-handed alpha
Helix 72	AH9	G	75	84	Right-handed alpha
Helix 73	AI1	G	121	129	Right-handed alpha
Helix 74	AI2	G	222	240	Right-handed alpha
Helix 75	AI3	G	240	245	Right-handed alpha
Helix 76	AI4	G	253	258	Right-handed alpha
Helix 77	AI5	G	258	266	Right-handed alpha
Helix 78	AI6	G	269	316	Right-handed alpha
Helix 79	AI7	G	325	330	Right-handed 310
Helix 80	AI8	G	331	336	Right-handed alpha
Helix 81	AI9	U	4	11	Right-handed alpha
Helix 82	AJ1	U	12	22	Right-handed alpha
Helix 83	AJ2	U	23	25	Right-handed 310
Helix 84	AJ3	U	27	31	Right-handed 310
Helix 85	AJ4	U	51	79	Right-handed alpha
Helix 86	AJ5	U	85	137	Right-handed alpha
Helix 87	AJ6	3	3	8	Right-handed alpha
Helix 88	AJ7	3	15	25	Right-handed alpha
Helix 89	AJ8	3	26	29	Right-handed 310
Helix 90	AJ9	3	31	36	Right-handed alpha
Helix 91	AK1	3	45	53	Right-handed alpha
Helix 92	AK2	3	54	58	Right-handed 310
Helix 93	AK3	3	67	79	Right-handed alpha
Helix 94	AK4	3	90	92	Right-handed 310
Helix 95	AK5	3	93	99	Right-handed alpha
Helix 96	AK6	I	48	58	Right-handed alpha
Helix 97	AK7	I	66	88	Right-handed alpha
Helix 98	AK8	I	97	110	Right-handed alpha
Helix 99	AK9	I	111	114	Right-handed 310
Helix 100	AL1	I	115	121	Right-handed alpha
Helix 101	AL2	2	2	22	Right-handed alpha
Helix 102	AL3	2	32	45	Right-handed alpha
Helix 103	AL4	2	62	70	Right-handed alpha
Helix 104	AL5	S	72	82	Right-handed alpha
Helix 105	AL6	S	252	265	Right-handed alpha
Helix 106	AL7	S	272	287	Right-handed alpha
Helix 107	AL8	S	302	321	Right-handed alpha
Helix 108	AL9	S	332	348	Right-handed alpha
Helix 109	AM1	S	352	364	Right-handed alpha
Helix 110	AM2	S	382	399	Right-handed alpha
Helix 111	AM3	J	2	19	Right-handed alpha
Helix 112	AM4	J	20	22	Right-handed 310
Helix 113	AM5	J	26	55	Right-handed alpha
Helix 114	AM6	J	161	204	Right-handed alpha
Helix 115	AM7	J	311	341	Right-handed alpha

There are 19 sheets in PDB entry 5U0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	187	190	first strand
Strand 2	N	196	199	anti-parallel
Strand 3	N	219	221	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	307	308	first strand
Strand 2	N	327	328	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	330	331	first strand
Strand 2	N	359	360	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	415	416	first strand
Strand 2	N	421	425	anti-parallel
Strand 3	N	434	437	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	520	522	first strand
Strand 2	N	527	530	anti-parallel
Strand 3	N	538	541	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	79	first strand
Strand 2	F	90	96	anti-parallel
Strand 3	F	102	110	anti-parallel
Strand 4	F	115	117	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	150	first strand
Strand 2	F	154	156	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	218	220	first strand
Strand 2	Q	227	229	anti-parallel
Strand 3	Q	242	245	anti-parallel
Strand 4	Q	254	255	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	277	281	first strand
Strand 2	Q	266	271	anti-parallel
Strand 3	Q	343	347	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	327	328	first strand
Strand 2	Q	333	334	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	454	455	first strand
Strand 2	Q	481	482	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	494	496	first strand
Strand 2	Q	510	512	anti-parallel
Strand 3	Q	517	519	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	97	98	first strand
Strand 2	R	2	3	anti-parallel
Strand 3	R	172	173	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	8	10	first strand
Strand 2	R	165	170	anti-parallel
Strand 3	R	136	141	anti-parallel
Strand 4	R	125	133	anti-parallel
Strand 5	R	30	35	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	8	10	first strand
Strand 2	R	165	170	anti-parallel
Strand 3	R	136	141	anti-parallel
Strand 4	R	125	133	anti-parallel
Strand 5	R	143	144	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	102	104	first strand
Strand 2	R	78	81	anti-parallel
Strand 3	R	56	59	anti-parallel
Strand 4	R	37	40	anti-parallel
Strand 5	R	119	120	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	5	8	first strand
Strand 2	T	125	130	anti-parallel
Strand 3	T	108	111	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	57	58	first strand
Strand 2	T	31	33	anti-parallel
Strand 3	T	98	99	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	113	114	first strand
Strand 2	2	124	125	anti-parallel
Strand 3	2	134	135	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U0P

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U0P