Analysis of interatomic Contacts of Structural Units in PDB entry:
5U0U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U0U entry

There are 4 chains in PDB entry 5U0U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLN 1	HIS 249
A	GLN 1	HIS 249
C	GLN 1	HIS 249
E	GLN 1	HIS 249

There are 12 helices in PDB entry 5U0U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	28	30	Right-handed 310
Helix 2	AA2	G	87	91	Right-handed 310
Helix 3	AA3	G	220	224	Right-handed 310
Helix 4	AA4	A	28	30	Right-handed 310
Helix 5	AA5	A	87	91	Right-handed 310
Helix 6	AA6	A	220	224	Right-handed 310
Helix 7	AA7	C	28	30	Right-handed 310
Helix 8	AA8	C	87	91	Right-handed 310
Helix 9	AA9	C	220	224	Right-handed 310
Helix 10	AB1	E	28	30	Right-handed 310
Helix 11	AB2	E	87	91	Right-handed 310
Helix 12	AB3	E	220	224	Right-handed 310

There are 20 sheets in PDB entry 5U0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	121	125	parallel
Strand 3	G	92	101	anti-parallel
Strand 4	G	32	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	59	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	151	first strand
Strand 2	G	244	248	parallel
Strand 3	G	226	232	anti-parallel
Strand 4	G	174	179	anti-parallel
Strand 5	G	186	189	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	151	first strand
Strand 2	G	244	248	parallel
Strand 3	G	226	232	anti-parallel
Strand 4	G	238	240	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	162	first strand
Strand 2	G	211	216	anti-parallel
Strand 3	G	203	208	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	121	125	parallel
Strand 3	A	92	101	anti-parallel
Strand 4	A	32	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	59	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	151	first strand
Strand 2	A	244	248	parallel
Strand 3	A	226	232	anti-parallel
Strand 4	A	174	179	anti-parallel
Strand 5	A	186	189	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	151	first strand
Strand 2	A	244	248	parallel
Strand 3	A	226	232	anti-parallel
Strand 4	A	238	240	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	162	first strand
Strand 2	A	211	216	anti-parallel
Strand 3	A	203	208	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	32	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	59	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	151	first strand
Strand 2	C	244	248	parallel
Strand 3	C	226	232	anti-parallel
Strand 4	C	174	179	anti-parallel
Strand 5	C	186	189	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	151	first strand
Strand 2	C	244	248	parallel
Strand 3	C	226	232	anti-parallel
Strand 4	C	238	240	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	162	first strand
Strand 2	C	211	216	anti-parallel
Strand 3	C	203	208	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	121	125	parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	59	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	151	first strand
Strand 2	E	244	248	parallel
Strand 3	E	226	232	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	186	189	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	151	first strand
Strand 2	E	244	248	parallel
Strand 3	E	226	232	anti-parallel
Strand 4	E	238	240	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	162	first strand
Strand 2	E	211	216	anti-parallel
Strand 3	E	203	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U0U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U0U