Analysis of interatomic Contacts of Structural Units in PDB entry:
5U1C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U1C entry

There are 10 chains in PDB entry 5U1C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ARG 269
B	CYS 56	ARG 269
G	C 4	T 11
E	A 15	T 28
F	A 10	G 34
C	PHE 1	ARG 269
D	CYS 56	ARG 269
H	C 4	T 11
I	A 15	T 28
J	A 10	G 34

There are 38 helices in PDB entry 5U1C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	16	Right-handed alpha
Helix 2	AA2	A	18	26	Right-handed alpha
Helix 3	AA3	A	29	40	Right-handed alpha
Helix 4	AA4	A	93	106	Right-handed alpha
Helix 5	AA5	A	119	122	Right-handed 310
Helix 6	AA6	A	123	133	Right-handed alpha
Helix 7	AA7	A	144	147	Right-handed 310
Helix 8	AA8	A	148	166	Right-handed alpha
Helix 9	AA9	A	167	169	Right-handed 310
Helix 10	AB1	A	171	186	Right-handed alpha
Helix 11	AB2	A	195	204	Right-handed alpha
Helix 12	AB3	B	67	71	Right-handed 310
Helix 13	AB4	B	93	108	Right-handed alpha
Helix 14	AB5	B	118	123	Right-handed alpha
Helix 15	AB6	B	123	134	Right-handed alpha
Helix 16	AB7	B	152	166	Right-handed alpha
Helix 17	AB8	B	167	169	Right-handed 310
Helix 18	AB9	B	171	186	Right-handed alpha
Helix 19	AC1	B	197	204	Right-handed alpha
Helix 20	AC2	C	2	16	Right-handed alpha
Helix 21	AC3	C	18	26	Right-handed alpha
Helix 22	AC4	C	29	40	Right-handed alpha
Helix 23	AC5	C	93	106	Right-handed alpha
Helix 24	AC6	C	119	122	Right-handed 310
Helix 25	AC7	C	123	133	Right-handed alpha
Helix 26	AC8	C	144	147	Right-handed 310
Helix 27	AC9	C	148	166	Right-handed alpha
Helix 28	AD1	C	167	169	Right-handed 310
Helix 29	AD2	C	171	186	Right-handed alpha
Helix 30	AD3	C	195	204	Right-handed alpha
Helix 31	AD4	D	67	71	Right-handed 310
Helix 32	AD5	D	93	108	Right-handed alpha
Helix 33	AD6	D	118	123	Right-handed alpha
Helix 34	AD7	D	123	134	Right-handed alpha
Helix 35	AD8	D	152	166	Right-handed alpha
Helix 36	AD9	D	167	169	Right-handed 310
Helix 37	AE1	D	171	186	Right-handed alpha
Helix 38	AE2	D	197	204	Right-handed alpha

There are 10 sheets in PDB entry 5U1C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	89	first strand
Strand 2	A	71	78	anti-parallel
Strand 3	A	60	68	anti-parallel
Strand 4	A	112	114	parallel
Strand 5	A	136	138	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	227	first strand
Strand 2	A	265	268	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	248	252	anti-parallel
Strand 3	A	257	261	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	60	66	anti-parallel
Strand 4	B	112	114	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	261	first strand
Strand 2	B	248	252	anti-parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	224	227	anti-parallel
Strand 5	B	265	268	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	89	first strand
Strand 2	C	71	78	anti-parallel
Strand 3	C	60	68	anti-parallel
Strand 4	C	112	114	parallel
Strand 5	C	136	138	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	227	first strand
Strand 2	C	265	268	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	244	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	257	261	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	88	first strand
Strand 2	D	73	78	anti-parallel
Strand 3	D	60	66	anti-parallel
Strand 4	D	112	114	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	261	first strand
Strand 2	D	248	252	anti-parallel
Strand 3	D	239	244	anti-parallel
Strand 4	D	224	227	anti-parallel
Strand 5	D	265	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U1C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U1C