Analysis of interatomic Contacts of Structural Units in PDB entry:
5U1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U1D entry

There are 3 chains in PDB entry 5U1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 173ALA 742
B
 ASP 130GLN 681
X
 MET 1PRO 55
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5U1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 181Right-handed alpha
Helix 2
AA2
A
185 202Right-handed alpha
Helix 3
AA3
A
203 217Right-handed alpha
Helix 4
AA4
A
220 271Right-handed alpha
Helix 5
AA5
A
272 279Right-handed alpha
Helix 6
AA6
A
280 287Right-handed alpha
Helix 7
AA7
A
288 320Right-handed alpha
Helix 8
AA8
A
326 373Right-handed alpha
Helix 9
AA9
A
373 380Right-handed alpha
Helix 10
AB1
A
382 437Right-handed alpha
Helix 11
AB2
A
440 462Right-handed alpha
Helix 12
AB3
A
463 483Right-handed alpha
Helix 13
AB4
A
543 553Right-handed alpha
Helix 14
AB5
A
568 572Right-handed 310
Helix 15
AB6
A
573 580Right-handed alpha
Helix 16
AB7
A
594 600Right-handed alpha
Helix 17
AB8
A
608 619Right-handed alpha
Helix 18
AB9
A
621 628Right-handed alpha
Helix 19
AC1
A
630 634Right-handed 310
Helix 20
AC2
A
644 660Right-handed alpha
Helix 21
AC3
A
674 686Right-handed alpha
Helix 22
AC4
A
688 694Right-handed 310
Helix 23
AC5
A
702 708Right-handed alpha
Helix 24
AC6
A
725 733Right-handed alpha
Helix 25
AC7
A
734 742Right-handed alpha
Helix 26
AC8
B
131 145Right-handed alpha
Helix 27
AC9
B
148 167Right-handed alpha
Helix 28
AD1
B
167 183Right-handed alpha
Helix 29
AD2
B
185 236Right-handed alpha
Helix 30
AD3
B
237 244Right-handed alpha
Helix 31
AD4
B
245 289Right-handed alpha
Helix 32
AD5
B
292 299Right-handed alpha
Helix 33
AD6
B
299 338Right-handed alpha
Helix 34
AD7
B
338 346Right-handed alpha
Helix 35
AD8
B
347 401Right-handed alpha
Helix 36
AD9
B
405 433Right-handed alpha
Helix 37
AE1
B
436 449Right-handed alpha
Helix 38
AE2
B
508 518Right-handed alpha
Helix 39
AE3
B
538 546Right-handed alpha
Helix 40
AE4
B
559 565Right-handed alpha
Helix 41
AE5
B
572 584Right-handed alpha
Helix 42
AE6
B
585 592Right-handed alpha
Helix 43
AE7
B
594 598Right-handed 310
Helix 44
AE8
B
608 624Right-handed alpha
Helix 45
AE9
B
638 646Right-handed alpha
Helix 46
AF1
B
647 654Right-handed 310
Helix 47
AF2
B
662 669Right-handed alpha
Helix 48
AF3
X
2 14Right-handed alpha
Helix 49
AF4
X
20 44Right-handed alpha
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There are 5 sheets in PDB entry 5U1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 527first strand
Strand 2
A
503 510anti-parallel
Strand 3
A
563 564anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 535first strand
Strand 2
A
695 698parallel
Strand 3
A
663 666parallel
Strand 4
A
581 584parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 716first strand
Strand 2
A
719 722anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 489first strand
Strand 2
B
471 475anti-parallel
Strand 3
B
524 526anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
548 549first strand
Strand 2
B
629 631parallel
Strand 3
B
657 659parallel
Strand 4
B
499 502parallel
Strand 5
B
671 674parallel
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