Analysis of interatomic Contacts of Structural Units in PDB entry:
5U1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U1J entry

There are 6 chains in PDB entry 5U1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 2GLN 315
A
 ILE 2GLN 315
C
 ILE 2GLN 315
D
 ILE 2GLN 315
U
 T 1 G 21
W
 C 4 A 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 5U1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 31Right-handed alpha
Helix 2
AA2
B
46 51Right-handed alpha
Helix 3
AA3
B
52 63Right-handed alpha
Helix 4
AA4
B
71 78Right-handed 310
Helix 5
AA5
B
104 111Right-handed alpha
Helix 6
AA6
B
122 129Right-handed alpha
Helix 7
AA7
B
149 154Right-handed alpha
Helix 8
AA8
B
167 180Right-handed alpha
Helix 9
AA9
B
180 186Right-handed alpha
Helix 10
AB1
B
211 230Right-handed alpha
Helix 11
AB2
B
231 235Right-handed 310
Helix 12
AB3
B
248 251Right-handed 310
Helix 13
AB4
B
272 281Right-handed alpha
Helix 14
AB5
B
298 313Right-handed alpha
Helix 15
AB6
A
16 31Right-handed alpha
Helix 16
AB7
A
46 51Right-handed alpha
Helix 17
AB8
A
52 62Right-handed alpha
Helix 18
AB9
A
71 78Right-handed 310
Helix 19
AC1
A
104 109Right-handed alpha
Helix 20
AC2
A
110 112Right-handed 310
Helix 21
AC3
A
122 129Right-handed alpha
Helix 22
AC4
A
149 157Right-handed alpha
Helix 23
AC5
A
167 179Right-handed alpha
Helix 24
AC6
A
180 186Right-handed alpha
Helix 25
AC7
A
211 227Right-handed alpha
Helix 26
AC8
A
230 235Right-handed 310
Helix 27
AC9
A
248 253Right-handed 310
Helix 28
AD1
A
272 281Right-handed alpha
Helix 29
AD2
A
298 313Right-handed alpha
Helix 30
AD3
C
16 30Right-handed alpha
Helix 31
AD4
C
46 51Right-handed alpha
Helix 32
AD5
C
52 63Right-handed alpha
Helix 33
AD6
C
71 78Right-handed 310
Helix 34
AD7
C
104 109Right-handed alpha
Helix 35
AD8
C
110 112Right-handed 310
Helix 36
AD9
C
122 128Right-handed alpha
Helix 37
AE1
C
129 131Right-handed 310
Helix 38
AE2
C
149 155Right-handed alpha
Helix 39
AE3
C
167 180Right-handed alpha
Helix 40
AE4
C
180 186Right-handed alpha
Helix 41
AE5
C
211 229Right-handed alpha
Helix 42
AE6
C
232 236Right-handed 310
Helix 43
AE7
C
248 252Right-handed 310
Helix 44
AE8
C
272 281Right-handed alpha
Helix 45
AE9
C
301 313Right-handed alpha
Helix 46
AF1
D
16 31Right-handed alpha
Helix 47
AF2
D
46 51Right-handed alpha
Helix 48
AF3
D
52 63Right-handed alpha
Helix 49
AF4
D
71 78Right-handed 310
Helix 50
AF5
D
104 110Right-handed alpha
Helix 51
AF6
D
122 128Right-handed alpha
Helix 52
AF7
D
149 157Right-handed alpha
Helix 53
AF8
D
167 178Right-handed alpha
Helix 54
AF9
D
180 186Right-handed alpha
Helix 55
AG1
D
211 230Right-handed alpha
Helix 56
AG2
D
231 236Right-handed 310
Helix 57
AG3
D
248 253Right-handed 310
Helix 58
AG4
D
272 280Right-handed alpha
Helix 59
AG5
D
298 313Right-handed alpha
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There are 4 sheets in PDB entry 5U1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 90first strand
Strand 2
B
93 100anti-parallel
Strand 3
B
35 39parallel
Strand 4
B
137 141parallel
Strand 5
B
4 8parallel
Strand 6
B
159 164parallel
Strand 7
B
199 206parallel
Strand 8
B
253 254parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 90first strand
Strand 2
A
93 100anti-parallel
Strand 3
A
35 40parallel
Strand 4
A
137 142parallel
Strand 5
A
4 8parallel
Strand 6
A
159 164parallel
Strand 7
A
199 205parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 88first strand
Strand 2
C
95 100anti-parallel
Strand 3
C
35 39parallel
Strand 4
C
137 141parallel
Strand 5
C
4 8parallel
Strand 6
C
159 164parallel
Strand 7
C
199 205parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 90first strand
Strand 2
D
93 100anti-parallel
Strand 3
D
35 40parallel
Strand 4
D
137 142parallel
Strand 5
D
4 8parallel
Strand 6
D
159 164parallel
Strand 7
D
199 205parallel
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