Analysis of interatomic Contacts of Structural Units in PDB entry:
5U1O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U1O entry

There are 3 chains in PDB entry 5U1O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	ARG 455
B	MET 5	ARG 455
C	MET 5	HIS 411

There are 65 helices in PDB entry 5U1O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	30	Right-handed alpha
Helix 2	AA2	A	43	50	Right-handed alpha
Helix 3	AA3	A	50	70	Right-handed alpha
Helix 4	AA4	A	71	74	Right-handed 310
Helix 5	AA5	A	84	110	Right-handed alpha
Helix 6	AA6	A	154	158	Right-handed 310
Helix 7	AA7	A	160	167	Right-handed alpha
Helix 8	AA8	A	180	193	Right-handed alpha
Helix 9	AA9	A	211	226	Right-handed alpha
Helix 10	AB1	A	275	279	Right-handed 310
Helix 11	AB2	A	315	332	Right-handed alpha
Helix 12	AB3	A	360	369	Right-handed alpha
Helix 13	AB4	A	382	387	Right-handed alpha
Helix 14	AB5	A	416	430	Right-handed alpha
Helix 15	AB6	A	433	439	Right-handed alpha
Helix 16	AB7	A	447	452	Right-handed 310
Helix 17	AB8	B	17	30	Right-handed alpha
Helix 18	AB9	B	43	50	Right-handed alpha
Helix 19	AC1	B	50	69	Right-handed alpha
Helix 20	AC2	B	70	74	Right-handed 310
Helix 21	AC3	B	84	110	Right-handed alpha
Helix 22	AC4	B	154	158	Right-handed 310
Helix 23	AC5	B	161	166	Right-handed alpha
Helix 24	AC6	B	180	193	Right-handed alpha
Helix 25	AC7	B	211	226	Right-handed alpha
Helix 26	AC8	B	275	279	Right-handed 310
Helix 27	AC9	B	315	332	Right-handed alpha
Helix 28	AD1	B	360	369	Right-handed alpha
Helix 29	AD2	B	382	387	Right-handed alpha
Helix 30	AD3	B	416	421	Right-handed alpha
Helix 31	AD4	B	421	430	Right-handed alpha
Helix 32	AD5	B	433	439	Right-handed alpha
Helix 33	AD6	B	447	452	Right-handed 310
Helix 34	AD7	C	17	30	Right-handed alpha
Helix 35	AD8	C	43	50	Right-handed alpha
Helix 36	AD9	C	50	70	Right-handed alpha
Helix 37	AE1	C	71	74	Right-handed 310
Helix 38	AE2	C	84	110	Right-handed alpha
Helix 39	AE3	C	154	158	Right-handed 310
Helix 40	AE4	C	160	167	Right-handed alpha
Helix 41	AE5	C	180	193	Right-handed alpha
Helix 42	AE6	C	211	226	Right-handed alpha
Helix 43	AE7	C	275	279	Right-handed 310
Helix 44	AE8	C	315	332	Right-handed alpha
Helix 45	AE9	C	360	369	Right-handed alpha
Helix 46	AF1	C	382	387	Right-handed alpha
Helix 47	AF2	C	416	430	Right-handed alpha
Helix 48	AF3	C	433	440	Right-handed alpha
Helix 49	AF4	C	447	453	Right-handed 310
Helix 50	AF5	D	17	30	Right-handed alpha
Helix 51	AF6	D	43	50	Right-handed alpha
Helix 52	AF7	D	50	70	Right-handed alpha
Helix 53	AF8	D	71	74	Right-handed 310
Helix 54	AF9	D	84	110	Right-handed alpha
Helix 55	AG1	D	154	158	Right-handed 310
Helix 56	AG2	D	160	167	Right-handed alpha
Helix 57	AG3	D	180	193	Right-handed alpha
Helix 58	AG4	D	211	226	Right-handed alpha
Helix 59	AG5	D	275	279	Right-handed 310
Helix 60	AG6	D	315	332	Right-handed alpha
Helix 61	AG7	D	360	369	Right-handed alpha
Helix 62	AG8	D	382	387	Right-handed alpha
Helix 63	AG9	D	416	430	Right-handed alpha
Helix 64	AH1	D	433	440	Right-handed alpha
Helix 65	AH2	D	447	452	Right-handed 310

There are 26 sheets in PDB entry 5U1O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	34	38	parallel
Strand 3	A	7	14	parallel
Strand 4	A	132	141	parallel
Strand 5	A	126	129	anti-parallel
Strand 6	A	120	123	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	34	38	parallel
Strand 3	A	7	14	parallel
Strand 4	A	132	141	parallel
Strand 5	A	302	304	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	83	first strand
Strand 2	B	76	83	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	267	269	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	196	200	parallel
Strand 3	A	173	177	parallel
Strand 4	A	260	263	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	246	250	anti-parallel
Strand 3	A	255	258	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	348	first strand
Strand 2	A	354	358	anti-parallel
Strand 3	A	406	413	anti-parallel
Strand 4	A	393	401	anti-parallel
Strand 5	A	373	381	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	132	135	parallel
Strand 3	B	126	129	anti-parallel
Strand 4	B	120	123	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	116	first strand
Strand 2	B	34	38	parallel
Strand 3	B	11	14	parallel
Strand 4	B	139	141	parallel
Strand 5	B	302	304	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	267	269	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	260	263	parallel
Strand 3	B	173	177	parallel
Strand 4	B	196	200	parallel
Strand 5	B	228	230	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	246	250	anti-parallel
Strand 3	B	255	258	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	354	358	anti-parallel
Strand 3	B	406	413	anti-parallel
Strand 4	B	393	401	anti-parallel
Strand 5	B	373	381	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	34	38	parallel
Strand 3	C	7	14	parallel
Strand 4	C	132	141	parallel
Strand 5	C	126	129	anti-parallel
Strand 6	C	120	123	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	34	38	parallel
Strand 3	C	7	14	parallel
Strand 4	C	132	141	parallel
Strand 5	C	302	304	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	83	first strand
Strand 2	D	76	83	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	267	269	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	196	200	parallel
Strand 3	C	173	177	parallel
Strand 4	C	260	263	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	240	first strand
Strand 2	C	246	250	anti-parallel
Strand 3	C	255	258	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	348	first strand
Strand 2	C	354	358	anti-parallel
Strand 3	C	406	413	anti-parallel
Strand 4	C	393	401	anti-parallel
Strand 5	C	373	381	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	116	first strand
Strand 2	D	34	38	parallel
Strand 3	D	7	14	parallel
Strand 4	D	132	141	parallel
Strand 5	D	126	129	anti-parallel
Strand 6	D	119	123	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	116	first strand
Strand 2	D	34	38	parallel
Strand 3	D	7	14	parallel
Strand 4	D	132	141	parallel
Strand 5	D	302	304	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	267	269	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	230	first strand
Strand 2	D	196	200	parallel
Strand 3	D	173	177	parallel
Strand 4	D	260	263	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	240	first strand
Strand 2	D	246	250	anti-parallel
Strand 3	D	255	258	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	348	first strand
Strand 2	D	354	358	anti-parallel
Strand 3	D	406	413	anti-parallel
Strand 4	D	393	401	anti-parallel
Strand 5	D	373	381	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U1O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U1O