Analysis of interatomic Contacts of Structural Units in PDB entry:
5U1S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U1S entry

There is 1 chain in PDB entry 5U1S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 53GLU 1358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 5U1S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 74Right-handed alpha
Helix 2
AA2
A
74 81Right-handed alpha
Helix 3
AA3
A
81 99Right-handed alpha
Helix 4
AA4
A
102 121Right-handed alpha
Helix 5
AA5
A
124 140Right-handed alpha
Helix 6
AA6
A
146 152Right-handed alpha
Helix 7
AA7
A
162 177Right-handed alpha
Helix 8
AA8
A
179 193Right-handed alpha
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
205 220Right-handed alpha
Helix 11
AB2
A
223 238Right-handed alpha
Helix 12
AB3
A
250 257Right-handed alpha
Helix 13
AB4
A
268 271Right-handed 310
Helix 14
AB5
A
272 282Right-handed alpha
Helix 15
AB6
A
291 295Right-handed 310
Helix 16
AB7
A
297 310Right-handed alpha
Helix 17
AB8
A
335 344Right-handed alpha
Helix 18
AB9
A
354 370Right-handed alpha
Helix 19
AC1
A
375 392Right-handed alpha
Helix 20
AC2
A
399 420Right-handed alpha
Helix 21
AC3
A
421 440Right-handed alpha
Helix 22
AC4
A
441 460Right-handed alpha
Helix 23
AC5
A
463 479Right-handed alpha
Helix 24
AC6
A
481 493Right-handed alpha
Helix 25
AC7
A
494 498Right-handed 310
Helix 26
AC8
A
503 517Right-handed alpha
Helix 27
AC9
A
518 523Right-handed alpha
Helix 28
AD1
A
534 544Right-handed alpha
Helix 29
AD2
A
551 555Right-handed 310
Helix 30
AD3
A
556 567Right-handed alpha
Helix 31
AD4
A
586 589Right-handed 310
Helix 32
AD5
A
590 606Right-handed alpha
Helix 33
AD6
A
611 623Right-handed alpha
Helix 34
AD7
A
626 631Right-handed alpha
Helix 35
AD8
A
635 652Right-handed alpha
Helix 36
AD9
A
654 668Right-handed alpha
Helix 37
AE1
A
668 673Right-handed alpha
Helix 38
AE2
A
675 690Right-handed alpha
Helix 39
AE3
A
692 707Right-handed alpha
Helix 40
AE4
A
713 723Right-handed alpha
Helix 41
AE5
A
724 725Right-handed 310
Helix 42
AE6
A
726 731Right-handed 310
Helix 43
AE7
A
733 743Right-handed alpha
Helix 44
AE8
A
743 749Right-handed alpha
Helix 45
AE9
A
750 753Right-handed 310
Helix 46
AF1
A
762 786Right-handed alpha
Helix 47
AF2
A
789 809Right-handed alpha
Helix 48
AF3
A
815 840Right-handed alpha
Helix 49
AF4
A
842 860Right-handed alpha
Helix 50
AF5
A
862 880Right-handed alpha
Helix 51
AF6
A
882 897Right-handed alpha
Helix 52
AF7
A
898 900Right-handed 310
Helix 53
AF8
A
905 916Right-handed alpha
Helix 54
AF9
A
918 931Right-handed alpha
Helix 55
AG1
A
932 937Right-handed 310
Helix 56
AG2
A
938 948Right-handed alpha
Helix 57
AG3
A
952 956Right-handed 310
Helix 58
AG4
A
957 959Right-handed 310
Helix 59
AG5
A
960 981Right-handed alpha
Helix 60
AG6
A
983 988Right-handed alpha
Helix 61
AG7
A
1045 1061Right-handed alpha
Helix 62
AG8
A
1064 1068Right-handed 310
Helix 63
AG9
A
1069 1091Right-handed alpha
Helix 64
AH1
A
1095 1107Right-handed alpha
Helix 65
AH2
A
1108 1124Right-handed alpha
Helix 66
AH3
A
1125 1131Right-handed 310
Helix 67
AH4
A
1144 1162Right-handed alpha
Helix 68
AH5
A
1213 1233Right-handed alpha
Helix 69
AH6
A
1233 1238Right-handed alpha
Helix 70
AH7
A
1242 1271Right-handed alpha
Helix 71
AH8
A
1275 1279Right-handed 310
Helix 72
AH9
A
1285 1304Right-handed alpha
Helix 73
AI1
A
1304 1310Right-handed alpha
Helix 74
AI2
A
1312 1316Right-handed 310
Helix 75
AI3
A
1320 1329Right-handed alpha
Helix 76
AI4
A
1336 1355Right-handed alpha
Helix 77
AI5
A
1360 1364Right-handed 310
Helix 78
AI6
A
1365 1382Right-handed alpha
Helix 79
AI7
A
1404 1408Right-handed 310
Helix 80
AI8
A
1421 1432Right-handed alpha
Helix 81
AI9
A
1456 1474Right-handed alpha
Helix 82
AJ1
A
1486 1496Right-handed alpha
Helix 83
AJ2
A
1513 1518Right-handed alpha
Helix 84
AJ3
A
1546 1554Right-handed alpha
Helix 85
AJ4
A
1567 1583Right-handed alpha
Helix 86
AJ5
A
1597 1604Right-handed alpha
Helix 87
AJ6
A
1605 1609Right-handed 310
Helix 88
AJ7
B
280 288Right-handed alpha
Helix 89
AJ8
B
364 373Right-handed alpha
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There are 6 sheets in PDB entry 5U1S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 319first strand
Strand 2
A
324 325anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
994 995first strand
Strand 2
A
1191 1197anti-parallel
Strand 3
A
1180 1186anti-parallel
Strand 4
A
1166 1173anti-parallel
Strand 5
A
1391 1396parallel
Strand 6
A
1416 1419parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1282 1283first strand
Strand 2
A
1387 1388anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1438 1439first strand
Strand 2
A
1626 1627parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1478 1481first strand
Strand 2
A
1446 1450parallel
Strand 3
A
1499 1503parallel
Strand 4
A
1526 1529parallel
Strand 5
A
1558 1562parallel
Strand 6
A
1619 1623anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1537 1539first strand
Strand 2
A
1542 1545anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il