Analysis of interatomic Contacts of Structural Units in PDB entry:
5U1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U1T entry

There are 2 chains in PDB entry 5U1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 73VAL 1629
B
 MET 257THR 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 5U1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 99Right-handed alpha
Helix 2
AA2
A
102 122Right-handed alpha
Helix 3
AA3
A
124 138Right-handed alpha
Helix 4
AA4
A
146 152Right-handed alpha
Helix 5
AA5
A
162 177Right-handed alpha
Helix 6
AA6
A
179 193Right-handed alpha
Helix 7
AA7
A
193 198Right-handed alpha
Helix 8
AA8
A
205 220Right-handed alpha
Helix 9
AA9
A
223 238Right-handed alpha
Helix 10
AB1
A
241 245Right-handed 310
Helix 11
AB2
A
250 260Right-handed alpha
Helix 12
AB3
A
266 271Right-handed 310
Helix 13
AB4
A
272 285Right-handed alpha
Helix 14
AB5
A
291 296Right-handed alpha
Helix 15
AB6
A
297 309Right-handed alpha
Helix 16
AB7
A
319 323Right-handed 310
Helix 17
AB8
A
331 348Right-handed alpha
Helix 18
AB9
A
353 371Right-handed alpha
Helix 19
AC1
A
375 392Right-handed alpha
Helix 20
AC2
A
398 419Right-handed alpha
Helix 21
AC3
A
421 439Right-handed alpha
Helix 22
AC4
A
441 460Right-handed alpha
Helix 23
AC5
A
464 479Right-handed alpha
Helix 24
AC6
A
481 493Right-handed alpha
Helix 25
AC7
A
494 499Right-handed 310
Helix 26
AC8
A
503 518Right-handed alpha
Helix 27
AC9
A
519 523Right-handed 310
Helix 28
AD1
A
534 544Right-handed alpha
Helix 29
AD2
A
551 555Right-handed 310
Helix 30
AD3
A
556 568Right-handed alpha
Helix 31
AD4
A
573 578Right-handed alpha
Helix 32
AD5
A
585 589Right-handed 310
Helix 33
AD6
A
590 607Right-handed alpha
Helix 34
AD7
A
611 623Right-handed alpha
Helix 35
AD8
A
626 631Right-handed alpha
Helix 36
AD9
A
635 652Right-handed alpha
Helix 37
AE1
A
654 668Right-handed alpha
Helix 38
AE2
A
668 673Right-handed alpha
Helix 39
AE3
A
675 690Right-handed alpha
Helix 40
AE4
A
692 707Right-handed alpha
Helix 41
AE5
A
713 724Right-handed alpha
Helix 42
AE6
A
725 730Right-handed 310
Helix 43
AE7
A
733 743Right-handed alpha
Helix 44
AE8
A
743 749Right-handed alpha
Helix 45
AE9
A
750 754Right-handed 310
Helix 46
AF1
A
762 787Right-handed alpha
Helix 47
AF2
A
789 810Right-handed alpha
Helix 48
AF3
A
815 840Right-handed alpha
Helix 49
AF4
A
842 860Right-handed alpha
Helix 50
AF5
A
862 880Right-handed alpha
Helix 51
AF6
A
882 898Right-handed alpha
Helix 52
AF7
A
905 916Right-handed alpha
Helix 53
AF8
A
918 926Right-handed alpha
Helix 54
AF9
A
926 931Right-handed alpha
Helix 55
AG1
A
932 934Right-handed 310
Helix 56
AG2
A
938 947Right-handed alpha
Helix 57
AG3
A
952 956Right-handed 310
Helix 58
AG4
A
957 959Right-handed 310
Helix 59
AG5
A
960 981Right-handed alpha
Helix 60
AG6
A
983 990Right-handed alpha
Helix 61
AG7
A
1045 1063Right-handed alpha
Helix 62
AG8
A
1064 1068Right-handed 310
Helix 63
AG9
A
1069 1089Right-handed alpha
Helix 64
AH1
A
1095 1107Right-handed alpha
Helix 65
AH2
A
1108 1123Right-handed alpha
Helix 66
AH3
A
1125 1131Right-handed 310
Helix 67
AH4
A
1144 1162Right-handed alpha
Helix 68
AH5
A
1213 1233Right-handed alpha
Helix 69
AH6
A
1233 1238Right-handed alpha
Helix 70
AH7
A
1242 1272Right-handed alpha
Helix 71
AH8
A
1275 1280Right-handed 310
Helix 72
AH9
A
1285 1304Right-handed alpha
Helix 73
AI1
A
1304 1310Right-handed alpha
Helix 74
AI2
A
1320 1329Right-handed alpha
Helix 75
AI3
A
1336 1355Right-handed alpha
Helix 76
AI4
A
1360 1364Right-handed 310
Helix 77
AI5
A
1365 1382Right-handed alpha
Helix 78
AI6
A
1398 1401Right-handed 310
Helix 79
AI7
A
1404 1408Right-handed 310
Helix 80
AI8
A
1421 1432Right-handed alpha
Helix 81
AI9
A
1456 1471Right-handed alpha
Helix 82
AJ1
A
1486 1496Right-handed alpha
Helix 83
AJ2
A
1513 1518Right-handed alpha
Helix 84
AJ3
A
1546 1554Right-handed alpha
Helix 85
AJ4
A
1567 1583Right-handed alpha
Helix 86
AJ5
A
1597 1606Right-handed alpha
Helix 87
AJ6
A
1607 1609Right-handed 310
Helix 88
AJ7
B
272 276Right-handed 310
Helix 89
AJ8
B
280 289Right-handed alpha
Helix 90
AJ9
B
364 372Right-handed alpha
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There are 4 sheets in PDB entry 5U1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
994 996first strand
Strand 2
A
1191 1197anti-parallel
Strand 3
A
1180 1186anti-parallel
Strand 4
A
1166 1173anti-parallel
Strand 5
A
1391 1396parallel
Strand 6
A
1416 1419parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1282 1283first strand
Strand 2
A
1387 1388anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1438 1441first strand
Strand 2
A
1626 1629parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1478 1481first strand
Strand 2
A
1446 1450parallel
Strand 3
A
1499 1503parallel
Strand 4
A
1526 1528parallel
Strand 5
A
1558 1562parallel
Strand 6
A
1619 1623anti-parallel
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