Analysis of interatomic Contacts of Structural Units in PDB entry:
5U2B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U2B entry

There are 6 chains in PDB entry 5U2B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 299ARG 548
B
 ASN 304ARG 548
C
 ARG 300LEU 549
D
 ASN 304HIS 550
E
 LEU 306ARG 548
F
 LYS 302ARG 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 5U2B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
301 304Right-handed 310
Helix 2
AA2
A
305 310Right-handed alpha
Helix 3
AA3
A
311 322Right-handed alpha
Helix 4
AA4
A
338 362Right-handed alpha
Helix 5
AA5
A
366 370Right-handed 310
Helix 6
AA6
A
371 395Right-handed alpha
Helix 7
AA7
A
413 417Right-handed 310
Helix 8
AA8
A
421 439Right-handed alpha
Helix 9
AA9
A
441 456Right-handed alpha
Helix 10
AB1
A
457 461Right-handed 310
Helix 11
AB2
A
465 493Right-handed alpha
Helix 12
AB3
A
496 528Right-handed alpha
Helix 13
AB4
A
537 546Right-handed alpha
Helix 14
AB5
B
311 322Right-handed alpha
Helix 15
AB6
B
341 363Right-handed alpha
Helix 16
AB7
B
371 395Right-handed alpha
Helix 17
AB8
B
411 416Right-handed alpha
Helix 18
AB9
B
421 439Right-handed alpha
Helix 19
AC1
B
441 456Right-handed alpha
Helix 20
AC2
B
473 493Right-handed alpha
Helix 21
AC3
B
496 530Right-handed alpha
Helix 22
AC4
B
537 546Right-handed alpha
Helix 23
AC5
C
305 310Right-handed alpha
Helix 24
AC6
C
311 322Right-handed alpha
Helix 25
AC7
C
338 363Right-handed alpha
Helix 26
AC8
C
371 395Right-handed alpha
Helix 27
AC9
C
413 418Right-handed 310
Helix 28
AD1
C
420 439Right-handed alpha
Helix 29
AD2
C
441 456Right-handed alpha
Helix 30
AD3
C
457 461Right-handed 310
Helix 31
AD4
C
466 494Right-handed alpha
Helix 32
AD5
C
496 529Right-handed alpha
Helix 33
AD6
C
537 546Right-handed alpha
Helix 34
AD7
C
547 549Right-handed 310
Helix 35
AD8
D
306 310Right-handed 310
Helix 36
AD9
D
311 322Right-handed alpha
Helix 37
AE1
D
342 364Right-handed alpha
Helix 38
AE2
D
371 395Right-handed alpha
Helix 39
AE3
D
413 417Right-handed 310
Helix 40
AE4
D
421 439Right-handed alpha
Helix 41
AE5
D
441 456Right-handed alpha
Helix 42
AE6
D
472 493Right-handed alpha
Helix 43
AE7
D
496 530Right-handed alpha
Helix 44
AE8
D
537 546Right-handed alpha
Helix 45
AE9
E
311 322Right-handed alpha
Helix 46
AF1
E
339 364Right-handed alpha
Helix 47
AF2
E
371 394Right-handed alpha
Helix 48
AF3
E
414 418Right-handed 310
Helix 49
AF4
E
421 439Right-handed alpha
Helix 50
AF5
E
441 456Right-handed alpha
Helix 51
AF6
E
473 493Right-handed alpha
Helix 52
AF7
E
496 527Right-handed alpha
Helix 53
AF8
E
538 546Right-handed alpha
Helix 54
AF9
F
305 310Right-handed 310
Helix 55
AG1
F
311 322Right-handed alpha
Helix 56
AG2
F
342 364Right-handed alpha
Helix 57
AG3
F
371 395Right-handed alpha
Helix 58
AG4
F
420 439Right-handed alpha
Helix 59
AG5
F
441 456Right-handed alpha
Helix 60
AG6
F
467 493Right-handed alpha
Helix 61
AG7
F
496 530Right-handed alpha
Helix 62
AG8
F
537 546Right-handed alpha
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There are 5 sheets in PDB entry 5U2B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
401 405first strand
Strand 2
C
408 411anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
401 405first strand
Strand 2
D
408 411anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
402 405first strand
Strand 2
E
408 410anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
401 405first strand
Strand 2
F
408 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il