Analysis of interatomic Contacts of Structural Units in PDB entry:
5U2G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U2G entry

There are 2 chains in PDB entry 5U2G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 40	LEU 831
B	LYS 40	THR 771

There are 51 helices in PDB entry 5U2G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	86	Right-handed alpha
Helix 2	AA2	A	156	167	Right-handed alpha
Helix 3	AA3	A	175	183	Right-handed alpha
Helix 4	AA4	A	192	202	Right-handed alpha
Helix 5	AA5	A	203	205	Right-handed 310
Helix 6	AA6	A	214	232	Right-handed alpha
Helix 7	AA7	A	236	245	Right-handed alpha
Helix 8	AA8	A	261	277	Right-handed alpha
Helix 9	AA9	A	277	284	Right-handed alpha
Helix 10	AB1	A	293	314	Right-handed alpha
Helix 11	AB2	A	332	343	Right-handed alpha
Helix 12	AB3	A	377	383	Right-handed 310
Helix 13	AB4	A	451	453	Right-handed 310
Helix 14	AB5	A	454	466	Right-handed alpha
Helix 15	AB6	A	503	509	Right-handed alpha
Helix 16	AB7	A	511	523	Right-handed alpha
Helix 17	AB8	A	523	532	Right-handed alpha
Helix 18	AB9	A	533	535	Right-handed 310
Helix 19	AC1	A	537	541	Right-handed 310
Helix 20	AC2	A	544	550	Right-handed 310
Helix 21	AC3	A	555	569	Right-handed alpha
Helix 22	AC4	A	686	703	Right-handed alpha
Helix 23	AC5	A	713	719	Right-handed 310
Helix 24	AC6	A	767	772	Right-handed alpha
Helix 25	AC7	A	772	785	Right-handed alpha
Helix 26	AC8	B	70	74	Right-handed 310
Helix 27	AC9	B	75	86	Right-handed alpha
Helix 28	AD1	B	156	167	Right-handed alpha
Helix 29	AD2	B	175	185	Right-handed alpha
Helix 30	AD3	B	192	201	Right-handed alpha
Helix 31	AD4	B	202	205	Right-handed 310
Helix 32	AD5	B	214	232	Right-handed alpha
Helix 33	AD6	B	236	245	Right-handed alpha
Helix 34	AD7	B	261	277	Right-handed alpha
Helix 35	AD8	B	277	284	Right-handed alpha
Helix 36	AD9	B	293	314	Right-handed alpha
Helix 37	AE1	B	332	342	Right-handed alpha
Helix 38	AE2	B	377	383	Right-handed 310
Helix 39	AE3	B	451	453	Right-handed 310
Helix 40	AE4	B	454	466	Right-handed alpha
Helix 41	AE5	B	503	509	Right-handed alpha
Helix 42	AE6	B	511	523	Right-handed alpha
Helix 43	AE7	B	523	532	Right-handed alpha
Helix 44	AE8	B	533	535	Right-handed 310
Helix 45	AE9	B	537	541	Right-handed 310
Helix 46	AF1	B	544	550	Right-handed 310
Helix 47	AF2	B	555	568	Right-handed alpha
Helix 48	AF3	B	686	703	Right-handed alpha
Helix 49	AF4	B	715	720	Right-handed alpha
Helix 50	AF5	B	767	772	Right-handed alpha
Helix 51	AF6	B	772	785	Right-handed alpha

There are 16 sheets in PDB entry 5U2G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	48	51	anti-parallel
Strand 3	A	287	290	parallel
Strand 4	A	578	582	anti-parallel
Strand 5	A	588	591	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	173	174	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	392	398	anti-parallel
Strand 3	A	349	357	anti-parallel
Strand 4	A	361	366	anti-parallel
Strand 5	A	371	375	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	392	398	anti-parallel
Strand 3	A	404	407	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	430	first strand
Strand 2	A	413	420	anti-parallel
Strand 3	A	747	754	anti-parallel
Strand 4	A	737	744	anti-parallel
Strand 5	A	725	731	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	449	first strand
Strand 2	A	553	554	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	475	first strand
Strand 2	A	499	502	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	803	first strand
Strand 2	A	816	821	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	61	first strand
Strand 2	B	48	51	anti-parallel
Strand 3	B	287	290	parallel
Strand 4	B	578	582	anti-parallel
Strand 5	B	588	591	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	173	174	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	392	398	anti-parallel
Strand 3	B	349	358	anti-parallel
Strand 4	B	361	366	anti-parallel
Strand 5	B	371	375	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	392	398	anti-parallel
Strand 3	B	404	407	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	430	first strand
Strand 2	B	413	420	anti-parallel
Strand 3	B	747	754	anti-parallel
Strand 4	B	737	744	anti-parallel
Strand 5	B	725	731	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	449	first strand
Strand 2	B	553	554	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	475	first strand
Strand 2	B	499	502	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	803	first strand
Strand 2	B	816	821	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U2G

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U2G