Analysis of interatomic Contacts of Structural Units in PDB entry:
5U2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U2J entry

There are 6 chains in PDB entry 5U2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ALA 1GLY 13
D
 ALA 15PRO 16
A
 MET 203LYS 313
B
 ASP 204LYS 313
C
 ALA 1GLY 13
C
 ALA 15PRO 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5U2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
4 12Right-handed alpha
Helix 2
AA2
A
238 243Right-handed alpha
Helix 3
AA3
A
245 254Right-handed alpha
Helix 4
AA4
A
274 278Right-handed 310
Helix 5
AA5
A
289 293Right-handed 310
Helix 6
AA6
B
238 243Right-handed alpha
Helix 7
AA7
B
245 253Right-handed alpha
Helix 8
AA8
B
291 293Right-handed 310
Helix 9
AA9
C
3 12Right-handed alpha
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There are 4 sheets in PDB entry 5U2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
B
278 280anti-parallel
Strand 3
B
287 289anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
236 237anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
287 288anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
236 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il