Analysis of interatomic Contacts of Structural Units in PDB entry:
5U2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U2P entry

There is 1 chain in PDB entry 5U2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 40ARG 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 5U2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 51Right-handed 310
Helix 2
AA2
A
52 67Right-handed alpha
Helix 3
AA3
A
76 78Right-handed 310
Helix 4
AA4
A
79 90Right-handed alpha
Helix 5
AA5
A
103 107Right-handed 310
Helix 6
AA6
A
108 113Right-handed alpha
Helix 7
AA7
A
121 125Right-handed 310
Helix 8
AA8
A
154 160Right-handed alpha
Helix 9
AA9
A
167 181Right-handed alpha
Helix 10
AB1
A
198 223Right-handed alpha
Helix 11
AB2
A
227 233Right-handed 310
Helix 12
AB3
A
234 247Right-handed alpha
Helix 13
AB4
A
251 255Right-handed 310
Helix 14
AB5
A
258 267Right-handed alpha
Helix 15
AB6
A
278 288Right-handed alpha
Helix 16
AB7
A
325 338Right-handed alpha
Helix 17
AB8
A
338 346Right-handed alpha
Helix 18
AB9
A
364 366Right-handed 310
Helix 19
AC1
A
367 374Right-handed alpha
Helix 20
AC2
A
375 378Right-handed 310
Helix 21
AC3
A
384 391Right-handed 310
Helix 22
AC4
A
402 407Right-handed 310
Helix 23
AC5
A
413 426Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5U2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 75first strand
Strand 2
A
41 47parallel
Strand 3
A
96 100parallel
Strand 4
A
315 319anti-parallel
Strand 5
A
139 140anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
271 277parallel
Strand 3
A
146 153anti-parallel
Strand 4
A
293 296anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
271 277parallel
Strand 3
A
146 153anti-parallel
Strand 4
A
308 311anti-parallel
Strand 5
A
380 382parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il