Analysis of interatomic Contacts of Structural Units in PDB entry:
5U2W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U2W entry

There are 4 chains in PDB entry 5U2W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 246
B
 ASN 2ALA 246
C
 ASN 2ALA 246
D
 ASN 2ALA 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5U2W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
40 54Right-handed alpha
Helix 3
AA3
A
67 83Right-handed alpha
Helix 4
AA4
A
104 116Right-handed alpha
Helix 5
AA5
A
116 128Right-handed alpha
Helix 6
AA6
A
141 145Right-handed 310
Helix 7
AA7
A
152 174Right-handed alpha
Helix 8
AA8
A
199 206Right-handed alpha
Helix 9
AA9
A
214 226Right-handed alpha
Helix 10
AB1
B
16 29Right-handed alpha
Helix 11
AB2
B
40 54Right-handed alpha
Helix 12
AB3
B
67 83Right-handed alpha
Helix 13
AB4
B
104 116Right-handed alpha
Helix 14
AB5
B
116 128Right-handed alpha
Helix 15
AB6
B
141 145Right-handed 310
Helix 16
AB7
B
152 174Right-handed alpha
Helix 17
AB8
B
175 177Right-handed 310
Helix 18
AB9
B
199 206Right-handed alpha
Helix 19
AC1
B
214 226Right-handed alpha
Helix 20
AC2
C
16 29Right-handed alpha
Helix 21
AC3
C
40 54Right-handed alpha
Helix 22
AC4
C
67 83Right-handed alpha
Helix 23
AC5
C
104 116Right-handed alpha
Helix 24
AC6
C
116 128Right-handed alpha
Helix 25
AC7
C
141 145Right-handed 310
Helix 26
AC8
C
152 174Right-handed alpha
Helix 27
AC9
C
199 206Right-handed alpha
Helix 28
AD1
C
214 226Right-handed alpha
Helix 29
AD2
D
16 29Right-handed alpha
Helix 30
AD3
D
40 54Right-handed alpha
Helix 31
AD4
D
67 83Right-handed alpha
Helix 32
AD5
D
104 116Right-handed alpha
Helix 33
AD6
D
116 128Right-handed alpha
Helix 34
AD7
D
141 145Right-handed 310
Helix 35
AD8
D
152 174Right-handed alpha
Helix 36
AD9
D
175 177Right-handed 310
Helix 37
AE1
D
199 207Right-handed alpha
Helix 38
AE2
D
214 227Right-handed alpha
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There are 4 sheets in PDB entry 5U2W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
32 37parallel
Strand 3
A
8 11parallel
Strand 4
A
87 90parallel
Strand 5
A
135 139parallel
Strand 6
A
179 185parallel
Strand 7
A
237 240parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
32 37parallel
Strand 3
B
8 11parallel
Strand 4
B
87 90parallel
Strand 5
B
135 139parallel
Strand 6
B
179 185parallel
Strand 7
B
237 240parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 62first strand
Strand 2
C
32 37parallel
Strand 3
C
8 11parallel
Strand 4
C
87 90parallel
Strand 5
C
135 139parallel
Strand 6
C
179 185parallel
Strand 7
C
237 240parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 62first strand
Strand 2
D
32 37parallel
Strand 3
D
8 11parallel
Strand 4
D
87 90parallel
Strand 5
D
135 139parallel
Strand 6
D
179 185parallel
Strand 7
D
237 240parallel
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