Analysis of interatomic Contacts of Structural Units in PDB entry:
5U34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U34 entry

There are 2 chains in PDB entry 5U34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1SER 1114
B
 G 0 A 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5U34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 45Right-handed alpha
Helix 2
AA2
A
67 81Right-handed alpha
Helix 3
AA3
A
91 107Right-handed alpha
Helix 4
AA4
A
108 111Right-handed 310
Helix 5
AA5
A
117 129Right-handed alpha
Helix 6
AA6
A
175 185Right-handed alpha
Helix 7
AA7
A
214 257Right-handed alpha
Helix 8
AA8
A
260 277Right-handed alpha
Helix 9
AA9
A
293 297Right-handed 310
Helix 10
AB1
A
298 307Right-handed alpha
Helix 11
AB2
A
314 326Right-handed alpha
Helix 12
AB3
A
335 343Right-handed alpha
Helix 13
AB4
A
345 347Right-handed 310
Helix 14
AB5
A
348 353Right-handed alpha
Helix 15
AB6
A
356 373Right-handed alpha
Helix 16
AB7
A
446 448Right-handed 310
Helix 17
AB8
A
510 515Right-handed alpha
Helix 18
AB9
A
520 524Right-handed 310
Helix 19
AC1
A
541 549Right-handed alpha
Helix 20
AC2
A
555 562Right-handed 310
Helix 21
AC3
A
628 656Right-handed alpha
Helix 22
AC4
A
657 660Right-handed 310
Helix 23
AC5
A
666 674Right-handed alpha
Helix 24
AC6
A
685 701Right-handed alpha
Helix 25
AC7
A
714 722Right-handed alpha
Helix 26
AC8
A
722 739Right-handed alpha
Helix 27
AC9
A
757 776Right-handed alpha
Helix 28
AD1
A
794 821Right-handed alpha
Helix 29
AD2
A
860 865Right-handed alpha
Helix 30
AD3
A
865 883Right-handed alpha
Helix 31
AD4
A
931 940Right-handed alpha
Helix 32
AD5
A
976 990Right-handed alpha
Helix 33
AD6
A
993 997Right-handed 310
Helix 34
AD7
A
1018 1025Right-handed alpha
Helix 35
AD8
A
1084 1089Right-handed 310
Helix 36
AD9
A
1093 1114Right-handed alpha
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There are 9 sheets in PDB entry 5U34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
502 508anti-parallel
Strand 3
A
468 481anti-parallel
Strand 4
A
392 394anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
502 508anti-parallel
Strand 3
A
468 481anti-parallel
Strand 4
A
460 465anti-parallel
Strand 5
A
450 452anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 407first strand
Strand 2
A
417 420anti-parallel
Strand 3
A
437 440anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 426first strand
Strand 2
A
431 434anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 529first strand
Strand 2
A
534 537anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 602first strand
Strand 2
A
610 620anti-parallel
Strand 3
A
577 586anti-parallel
Strand 4
A
565 570anti-parallel
Strand 5
A
844 848parallel
Strand 6
A
889 893parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 826first strand
Strand 2
A
834 837anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
952 953first strand
Strand 2
A
911 913anti-parallel
Strand 3
A
959 963anti-parallel
Strand 4
A
971 975anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1003first strand
Strand 2
A
1012 1014anti-parallel
Strand 3
A
1029 1032anti-parallel
Strand 4
A
1037 1041anti-parallel
Strand 5
A
1090 1092anti-parallel
Strand 6
A
1076 1078anti-parallel
Strand 7
A
999 1003anti-parallel
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