Analysis of interatomic Contacts of Structural Units in PDB entry:
5U3F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U3F entry

There are 2 chains in PDB entry 5U3F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 35	GLY 368
B	TYR 34	GLY 368

There are 20 helices in PDB entry 5U3F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	73	Right-handed alpha
Helix 2	AA2	A	94	109	Right-handed alpha
Helix 3	AA3	A	115	131	Right-handed alpha
Helix 4	AA4	A	132	134	Right-handed 310
Helix 5	AA5	A	205	211	Right-handed alpha
Helix 6	AA6	A	212	221	Right-handed alpha
Helix 7	AA7	A	252	255	Right-handed 310
Helix 8	AA8	A	270	283	Right-handed alpha
Helix 9	AA9	A	293	303	Right-handed alpha
Helix 10	AB1	A	339	354	Right-handed alpha
Helix 11	AB2	B	68	73	Right-handed alpha
Helix 12	AB3	B	94	109	Right-handed alpha
Helix 13	AB4	B	115	131	Right-handed alpha
Helix 14	AB5	B	132	134	Right-handed 310
Helix 15	AB6	B	205	211	Right-handed alpha
Helix 16	AB7	B	212	222	Right-handed alpha
Helix 17	AB8	B	252	255	Right-handed 310
Helix 18	AB9	B	270	284	Right-handed alpha
Helix 19	AC1	B	293	303	Right-handed alpha
Helix 20	AC2	B	339	354	Right-handed alpha

There are 9 sheets in PDB entry 5U3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	57	first strand
Strand 2	A	38	45	anti-parallel
Strand 3	A	163	173	anti-parallel
Strand 4	A	142	151	anti-parallel
Strand 5	A	75	77	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	57	first strand
Strand 2	A	38	45	anti-parallel
Strand 3	A	163	173	anti-parallel
Strand 4	A	142	151	anti-parallel
Strand 5	A	80	84	anti-parallel
Strand 6	A	90	93	anti-parallel
Strand 7	A	364	366	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	B	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	226	230	anti-parallel
Strand 3	A	184	188	parallel
Strand 4	A	317	326	parallel
Strand 5	A	306	313	anti-parallel
Strand 6	A	245	250	anti-parallel
Strand 7	A	257	261	anti-parallel
Strand 8	A	286	290	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	226	230	anti-parallel
Strand 3	A	184	188	parallel
Strand 4	A	317	326	parallel
Strand 5	A	329	332	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	57	first strand
Strand 2	B	38	45	anti-parallel
Strand 3	B	163	173	anti-parallel
Strand 4	B	142	151	anti-parallel
Strand 5	B	75	77	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	57	first strand
Strand 2	B	38	45	anti-parallel
Strand 3	B	163	173	anti-parallel
Strand 4	B	142	151	anti-parallel
Strand 5	B	80	84	anti-parallel
Strand 6	B	90	93	anti-parallel
Strand 7	B	364	368	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	226	230	anti-parallel
Strand 3	B	184	188	parallel
Strand 4	B	317	326	parallel
Strand 5	B	306	313	anti-parallel
Strand 6	B	245	250	anti-parallel
Strand 7	B	257	261	anti-parallel
Strand 8	B	286	290	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	226	230	anti-parallel
Strand 3	B	184	188	parallel
Strand 4	B	317	326	parallel
Strand 5	B	329	332	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U3F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U3F