Analysis of interatomic Contacts of Structural Units in PDB entry:
5U47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U47 entry

There is 1 chain in PDB entry 5U47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 72ASP 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5U47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 135Right-handed alpha
Helix 2
AA2
A
137 146Right-handed alpha
Helix 3
AA3
A
156 160Right-handed 310
Helix 4
AA4
A
163 177Right-handed alpha
Helix 5
AA5
A
198 203Right-handed alpha
Helix 6
AA6
A
222 228Right-handed alpha
Helix 7
AA7
A
228 233Right-handed alpha
Helix 8
AA8
A
271 290Right-handed alpha
Helix 9
AA9
A
341 343Right-handed 310
Helix 10
AB1
A
344 357Right-handed alpha
Helix 11
AB2
A
380 385Right-handed alpha
Helix 12
AB3
A
395 401Right-handed alpha
Helix 13
AB4
A
403 415Right-handed alpha
Helix 14
AB5
A
415 426Right-handed alpha
Helix 15
AB6
A
447 454Right-handed alpha
Helix 16
AB7
A
455 457Right-handed 310
Helix 17
AB8
A
463 476Right-handed alpha
Helix 18
AB9
A
510 527Right-handed alpha
Helix 19
AC1
A
602 604Right-handed 310
Helix 20
AC2
A
605 621Right-handed alpha
Helix 21
AC3
A
621 626Right-handed alpha
Helix 22
AC4
A
649 660Right-handed alpha
Helix 23
AC5
A
707 719Right-handed alpha
Helix 24
AC6
A
742 746Right-handed 310
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There are 12 sheets in PDB entry 5U47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
237 240anti-parallel
Strand 3
A
255 258anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
90 103anti-parallel
Strand 3
A
182 191anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
90 103anti-parallel
Strand 3
A
83 84anti-parallel
Strand 4
A
265 268parallel
Strand 5
A
486 491anti-parallel
Strand 6
A
496 499anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 209first strand
Strand 2
A
216 220anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 312first strand
Strand 2
A
293 300anti-parallel
Strand 3
A
589 596anti-parallel
Strand 4
A
574 582anti-parallel
Strand 5
A
551 558anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
392 394anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 373first strand
Strand 2
A
376 378anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
460 461anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
504 506anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 535first strand
Strand 2
A
540 541anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 667first strand
Strand 2
A
689 694parallel
Strand 3
A
673 676anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 725first strand
Strand 2
A
748 754parallel
Strand 3
A
731 735anti-parallel
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