Analysis of interatomic Contacts of Structural Units in PDB entry:
5U4H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U4H entry

There are 2 chains in PDB entry 5U4H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN -1	SER 418
B	ASN -1	SER 418

There are 38 helices in PDB entry 5U4H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	32	Right-handed alpha
Helix 2	AA2	A	33	35	Right-handed 310
Helix 3	AA3	A	47	60	Right-handed alpha
Helix 4	AA4	A	75	78	Right-handed 310
Helix 5	AA5	A	84	89	Right-handed alpha
Helix 6	AA6	A	91	96	Right-handed 310
Helix 7	AA7	A	97	106	Right-handed alpha
Helix 8	AA8	A	123	133	Right-handed alpha
Helix 9	AA9	A	163	175	Right-handed alpha
Helix 10	AB1	A	189	202	Right-handed alpha
Helix 11	AB2	A	232	247	Right-handed alpha
Helix 12	AB3	A	256	259	Right-handed 310
Helix 13	AB4	A	260	270	Right-handed alpha
Helix 14	AB5	A	304	306	Right-handed 310
Helix 15	AB6	A	307	316	Right-handed alpha
Helix 16	AB7	A	335	342	Right-handed alpha
Helix 17	AB8	A	370	384	Right-handed alpha
Helix 18	AB9	A	393	399	Right-handed 310
Helix 19	AC1	A	402	409	Right-handed alpha
Helix 20	AC2	B	21	32	Right-handed alpha
Helix 21	AC3	B	33	35	Right-handed 310
Helix 22	AC4	B	47	60	Right-handed alpha
Helix 23	AC5	B	75	78	Right-handed 310
Helix 24	AC6	B	84	89	Right-handed alpha
Helix 25	AC7	B	90	96	Right-handed 310
Helix 26	AC8	B	97	106	Right-handed alpha
Helix 27	AC9	B	123	133	Right-handed alpha
Helix 28	AD1	B	163	175	Right-handed alpha
Helix 29	AD2	B	189	202	Right-handed alpha
Helix 30	AD3	B	232	247	Right-handed alpha
Helix 31	AD4	B	256	259	Right-handed 310
Helix 32	AD5	B	260	270	Right-handed alpha
Helix 33	AD6	B	304	306	Right-handed 310
Helix 34	AD7	B	307	317	Right-handed alpha
Helix 35	AD8	B	335	342	Right-handed alpha
Helix 36	AD9	B	370	384	Right-handed alpha
Helix 37	AE1	B	393	399	Right-handed 310
Helix 38	AE2	B	402	409	Right-handed alpha

There are 12 sheets in PDB entry 5U4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	367	first strand
Strand 2	A	387	391	parallel
Strand 3	A	3	7	anti-parallel
Strand 4	A	413	417	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	249	253	parallel
Strand 3	A	280	284	anti-parallel
Strand 4	A	273	276	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	70	74	anti-parallel
Strand 3	A	39	42	anti-parallel
Strand 4	A	226	228	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	107	111	parallel
Strand 3	A	143	147	anti-parallel
Strand 4	A	136	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	180	184	parallel
Strand 3	A	213	217	anti-parallel
Strand 4	A	205	207	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	321	325	parallel
Strand 3	A	352	356	anti-parallel
Strand 4	A	345	349	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	367	first strand
Strand 2	B	387	391	parallel
Strand 3	B	3	7	anti-parallel
Strand 4	B	413	417	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	249	253	parallel
Strand 3	B	280	284	anti-parallel
Strand 4	B	273	277	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	39	42	anti-parallel
Strand 4	B	226	228	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	107	111	parallel
Strand 3	B	143	147	anti-parallel
Strand 4	B	136	140	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	180	184	parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	205	207	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	321	326	parallel
Strand 3	B	352	356	anti-parallel
Strand 4	B	345	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U4H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U4H