Analysis of interatomic Contacts of Structural Units in PDB entry:
5U4U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U4U entry

There is 1 chain in PDB entry 5U4U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 585LEU 762
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 5U4U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
602 614Right-handed alpha
Helix 2
AA2
A
641 645Right-handed 310
Helix 3
AA3
A
662 677Right-handed alpha
Helix 4
AA4
A
709 724Right-handed alpha
Helix 5
AA5
A
742 761Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5U4U.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 623first strand
Strand 2
A
626 635anti-parallel
Strand 3
A
592 598parallel
Strand 4
A
655 660parallel
Strand 5
A
693 697parallel
Strand 6
A
726 729parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il