Analysis of interatomic Contacts of Structural Units in PDB entry:
5U4W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U4W entry

There are 12 chains in PDB entry 5U4W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR -3	LYS 394
B	PHE 1	THR 81
C	TYR -3	LYS 394
D	PHE 1	THR 81
E	TYR -3	LYS 394
F	PHE 1	THR 81
G	GLY 436	ALA 501
H	ARG 23	SER 75
I	GLY 436	ALA 501
J	ARG 23	SER 75
K	GLY 436	ALA 501
L	ARG 23	SER 75

There are 36 helices in PDB entry 5U4W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	5	Right-handed alpha
Helix 2	AA2	A	82	87	Right-handed 310
Helix 3	AA3	A	100	104	Right-handed 310
Helix 4	AA4	A	233	236	Right-handed 310
Helix 5	AA5	A	256	265	Right-handed alpha
Helix 6	AA6	B	15	19	Right-handed 310
Helix 7	AA7	C	0	5	Right-handed alpha
Helix 8	AA8	C	82	87	Right-handed 310
Helix 9	AA9	C	100	104	Right-handed 310
Helix 10	AB1	C	233	236	Right-handed 310
Helix 11	AB2	C	256	265	Right-handed alpha
Helix 12	AB3	D	15	19	Right-handed 310
Helix 13	AB4	E	0	5	Right-handed alpha
Helix 14	AB5	E	82	87	Right-handed 310
Helix 15	AB6	E	100	104	Right-handed 310
Helix 16	AB7	E	233	236	Right-handed 310
Helix 17	AB8	E	256	265	Right-handed alpha
Helix 18	AB9	F	15	19	Right-handed 310
Helix 19	AC1	G	437	454	Right-handed alpha
Helix 20	AC2	G	462	478	Right-handed alpha
Helix 21	AC3	G	483	499	Right-handed alpha
Helix 22	AC4	H	26	39	Right-handed alpha
Helix 23	AC5	H	40	52	Right-handed alpha
Helix 24	AC6	H	56	71	Right-handed alpha
Helix 25	AC7	I	437	454	Right-handed alpha
Helix 26	AC8	I	462	478	Right-handed alpha
Helix 27	AC9	I	483	499	Right-handed alpha
Helix 28	AD1	J	26	39	Right-handed alpha
Helix 29	AD2	J	40	52	Right-handed alpha
Helix 30	AD3	J	56	71	Right-handed alpha
Helix 31	AD4	K	437	454	Right-handed alpha
Helix 32	AD5	K	462	478	Right-handed alpha
Helix 33	AD6	K	483	499	Right-handed alpha
Helix 34	AD7	L	26	39	Right-handed alpha
Helix 35	AD8	L	40	52	Right-handed alpha
Helix 36	AD9	L	56	71	Right-handed alpha

There are 27 sheets in PDB entry 5U4W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	160	164	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	276	278	anti-parallel
Strand 5	A	272	273	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	26	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	179	186	anti-parallel
Strand 4	A	171	175	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	54	72	anti-parallel
Strand 4	A	196	200	first strand
Strand 5	A	205	209	anti-parallel
Strand 6	A	269	270	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	54	72	anti-parallel
Strand 3	A	109	129	anti-parallel
Strand 4	B	43	53	first strand
Strand 5	B	73	80	anti-parallel
Strand 6	B	9	13	parallel
Strand 7	B	2	6	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	250	252	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	320	322	anti-parallel
Strand 3	A	367	370	anti-parallel
Strand 4	A	350	351	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	374	380	anti-parallel
Strand 3	A	387	393	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	30	36	anti-parallel
Strand 3	B	66	68	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	50	anti-parallel
Strand 4	C	135	143	anti-parallel
Strand 5	C	160	164	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	50	anti-parallel
Strand 4	C	276	278	anti-parallel
Strand 5	C	272	273	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	26	first strand
Strand 2	C	282	288	anti-parallel
Strand 3	C	179	186	anti-parallel
Strand 4	C	171	175	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	99	first strand
Strand 2	C	109	129	anti-parallel
Strand 3	C	54	72	anti-parallel
Strand 4	C	196	200	first strand
Strand 5	C	205	209	anti-parallel
Strand 6	C	269	270	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	222	first strand
Strand 2	C	54	72	anti-parallel
Strand 3	C	109	129	anti-parallel
Strand 4	D	43	53	first strand
Strand 5	D	73	80	anti-parallel
Strand 6	D	9	13	parallel
Strand 7	D	2	6	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	240	first strand
Strand 2	C	250	252	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	314	first strand
Strand 2	C	320	322	anti-parallel
Strand 3	C	367	370	anti-parallel
Strand 4	C	350	351	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	374	380	anti-parallel
Strand 3	C	387	393	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	30	36	anti-parallel
Strand 3	D	66	68	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	35	parallel
Strand 3	E	38	50	anti-parallel
Strand 4	E	135	143	anti-parallel
Strand 5	E	160	164	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	35	parallel
Strand 3	E	38	50	anti-parallel
Strand 4	E	276	278	anti-parallel
Strand 5	E	272	273	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	26	first strand
Strand 2	E	282	288	anti-parallel
Strand 3	E	179	186	anti-parallel
Strand 4	E	171	175	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	99	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	54	72	anti-parallel
Strand 4	E	196	200	first strand
Strand 5	E	205	209	anti-parallel
Strand 6	E	269	270	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	222	first strand
Strand 2	E	54	72	anti-parallel
Strand 3	E	109	129	anti-parallel
Strand 4	F	43	53	first strand
Strand 5	F	73	80	anti-parallel
Strand 6	F	9	13	parallel
Strand 7	F	2	6	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	240	first strand
Strand 2	E	250	252	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	314	first strand
Strand 2	E	320	322	anti-parallel
Strand 3	E	367	370	anti-parallel
Strand 4	E	350	351	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	340	first strand
Strand 2	E	374	380	anti-parallel
Strand 3	E	387	393	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	27	first strand
Strand 2	F	30	36	anti-parallel
Strand 3	F	66	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U4W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U4W