Analysis of interatomic Contacts of Structural Units in PDB entry:
5U56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U56 entry

There are 4 chains in PDB entry 5U56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 2LYS 195
A
 ALA 0LYS 201
D
 ASN 1ILE 194
B
 ALA 0LYS 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5U56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
12 26Right-handed alpha
Helix 2
AA2
C
38 46Right-handed alpha
Helix 3
AA3
C
66 75Right-handed alpha
Helix 4
AA4
C
84 102Right-handed alpha
Helix 5
AA5
C
102 112Right-handed alpha
Helix 6
AA6
C
115 133Right-handed alpha
Helix 7
AA7
C
134 138Right-handed 310
Helix 8
AA8
C
149 165Right-handed alpha
Helix 9
AA9
C
170 173Right-handed 310
Helix 10
AB1
C
174 186Right-handed alpha
Helix 11
AB2
C
186 194Right-handed alpha
Helix 12
AB3
A
9 22Right-handed alpha
Helix 13
AB4
A
33 35Right-handed 310
Helix 14
AB5
A
36 47Right-handed alpha
Helix 15
AB6
A
64 76Right-handed alpha
Helix 16
AB7
A
85 103Right-handed alpha
Helix 17
AB8
A
103 110Right-handed alpha
Helix 18
AB9
A
116 149Right-handed alpha
Helix 19
AC1
A
156 172Right-handed alpha
Helix 20
AC2
A
180 191Right-handed alpha
Helix 21
AC3
A
193 200Right-handed alpha
Helix 22
AC4
D
12 25Right-handed alpha
Helix 23
AC5
D
38 46Right-handed alpha
Helix 24
AC6
D
66 75Right-handed alpha
Helix 25
AC7
D
84 101Right-handed alpha
Helix 26
AC8
D
102 112Right-handed alpha
Helix 27
AC9
D
115 134Right-handed alpha
Helix 28
AD1
D
135 138Right-handed 310
Helix 29
AD2
D
149 165Right-handed alpha
Helix 30
AD3
D
178 186Right-handed alpha
Helix 31
AD4
D
186 193Right-handed alpha
Helix 32
AD5
B
9 23Right-handed alpha
Helix 33
AD6
B
33 35Right-handed 310
Helix 34
AD7
B
36 47Right-handed alpha
Helix 35
AD8
B
64 76Right-handed alpha
Helix 36
AD9
B
85 103Right-handed alpha
Helix 37
AE1
B
103 110Right-handed alpha
Helix 38
AE2
B
116 149Right-handed alpha
Helix 39
AE3
B
156 172Right-handed alpha
Helix 40
AE4
B
180 191Right-handed alpha
Helix 41
AE5
B
193 200Right-handed alpha
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There are 4 sheets in PDB entry 5U56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 33first strand
Strand 2
C
4 8parallel
Strand 3
C
53 56anti-parallel
Strand 4
C
59 61anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
2 5parallel
Strand 3
A
54 56anti-parallel
Strand 4
A
61 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 33first strand
Strand 2
D
4 8parallel
Strand 3
D
53 55anti-parallel
Strand 4
D
60 61anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
1 5parallel
Strand 3
B
54 56anti-parallel
Strand 4
B
61 62anti-parallel
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