Analysis of interatomic Contacts of Structural Units in PDB entry:
5U5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U5N entry

There are 2 chains in PDB entry 5U5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 10ARG 288
B
 LEU 11MET 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5U5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 37Right-handed alpha
Helix 2
AA2
A
69 81Right-handed alpha
Helix 3
AA3
A
91 93Right-handed 310
Helix 4
AA4
A
94 105Right-handed alpha
Helix 5
AA5
A
117 129Right-handed alpha
Helix 6
AA6
A
139 156Right-handed alpha
Helix 7
AA7
A
179 192Right-handed alpha
Helix 8
AA8
A
197 201Right-handed 310
Helix 9
AA9
A
206 213Right-handed alpha
Helix 10
AB1
A
217 221Right-handed 310
Helix 11
AB2
A
249 269Right-handed alpha
Helix 12
AB3
A
277 284Right-handed alpha
Helix 13
AB4
B
23 37Right-handed alpha
Helix 14
AB5
B
66 68Right-handed 310
Helix 15
AB6
B
69 81Right-handed alpha
Helix 16
AB7
B
91 93Right-handed 310
Helix 17
AB8
B
94 105Right-handed alpha
Helix 18
AB9
B
117 129Right-handed alpha
Helix 19
AC1
B
139 156Right-handed alpha
Helix 20
AC2
B
179 192Right-handed alpha
Helix 21
AC3
B
197 201Right-handed 310
Helix 22
AC4
B
206 213Right-handed alpha
Helix 23
AC5
B
217 221Right-handed 310
Helix 24
AC6
B
249 270Right-handed alpha
Helix 25
AC7
B
277 285Right-handed alpha
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There are 5 sheets in PDB entry 5U5N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
85 88parallel
Strand 3
A
109 111parallel
Strand 4
A
132 134parallel
Strand 5
A
275 276parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
60 66parallel
Strand 3
A
53 57anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
164 171parallel
Strand 3
A
224 232anti-parallel
Strand 4
A
238 247anti-parallel
Strand 5
B
238 247anti-parallel
Strand 6
B
224 232anti-parallel
Strand 7
B
164 171anti-parallel
Strand 8
B
202 204parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 19first strand
Strand 2
B
85 88parallel
Strand 3
B
109 111parallel
Strand 4
B
132 134parallel
Strand 5
B
275 276parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
60 65parallel
Strand 3
B
53 57anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il