Analysis of interatomic Contacts of Structural Units in PDB entry:
5U63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U63 entry

There are 2 chains in PDB entry 5U63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	GLU 317
B	SER -2	GLN 316

There are 22 helices in PDB entry 5U63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	28	Right-handed alpha
Helix 2	AA2	A	42	47	Right-handed 310
Helix 3	AA3	A	61	76	Right-handed alpha
Helix 4	AA4	A	122	129	Right-handed alpha
Helix 5	AA5	A	136	141	Right-handed alpha
Helix 6	AA6	A	142	145	Right-handed 310
Helix 7	AA7	A	155	167	Right-handed alpha
Helix 8	AA8	A	184	197	Right-handed alpha
Helix 9	AA9	A	249	253	Right-handed 310
Helix 10	AB1	A	285	289	Right-handed 310
Helix 11	AB2	A	294	316	Right-handed alpha
Helix 12	AB3	B	15	28	Right-handed alpha
Helix 13	AB4	B	41	47	Right-handed 310
Helix 14	AB5	B	62	76	Right-handed alpha
Helix 15	AB6	B	122	129	Right-handed alpha
Helix 16	AB7	B	136	141	Right-handed alpha
Helix 17	AB8	B	142	145	Right-handed 310
Helix 18	AB9	B	155	166	Right-handed alpha
Helix 19	AC1	B	184	197	Right-handed alpha
Helix 20	AC2	B	249	253	Right-handed 310
Helix 21	AC3	B	285	288	Right-handed 310
Helix 22	AC4	B	294	316	Right-handed alpha

There are 13 sheets in PDB entry 5U63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	33	35	parallel
Strand 3	A	5	12	parallel
Strand 4	A	103	111	parallel
Strand 5	A	95	99	anti-parallel
Strand 6	A	85	89	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	33	35	parallel
Strand 3	A	5	12	parallel
Strand 4	A	103	111	parallel
Strand 5	A	281	283	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	245	247	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	238	241	parallel
Strand 3	A	148	152	parallel
Strand 4	A	171	175	parallel
Strand 5	A	200	203	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	213	first strand
Strand 2	A	218	225	anti-parallel
Strand 3	A	231	235	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	262	263	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	33	35	parallel
Strand 3	B	4	12	parallel
Strand 4	B	103	111	parallel
Strand 5	B	95	99	anti-parallel
Strand 6	B	85	89	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	33	35	parallel
Strand 3	B	4	12	parallel
Strand 4	B	103	111	parallel
Strand 5	B	281	283	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	60	61	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	245	247	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	238	241	parallel
Strand 3	B	148	152	parallel
Strand 4	B	171	175	parallel
Strand 5	B	200	203	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	213	first strand
Strand 2	B	218	225	anti-parallel
Strand 3	B	231	235	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	262	263	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U63

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U63