Analysis of interatomic Contacts of Structural Units in PDB entry:
5U68

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U68 entry

There are 2 chains in PDB entry 5U68 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 25	SER 509
B	GLY 25	SER 255

There are 57 helices in PDB entry 5U68. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	97	Right-handed alpha
Helix 2	AA2	A	148	159	Right-handed alpha
Helix 3	AA3	A	162	171	Right-handed alpha
Helix 4	AA4	A	195	201	Right-handed alpha
Helix 5	AA5	A	217	240	Right-handed alpha
Helix 6	AA6	A	253	263	Right-handed alpha
Helix 7	AA7	A	267	277	Right-handed alpha
Helix 8	AA8	A	277	284	Right-handed alpha
Helix 9	AA9	A	370	372	Right-handed 310
Helix 10	AB1	A	380	385	Right-handed alpha
Helix 11	AB2	A	473	478	Right-handed 310
Helix 12	AB3	A	479	483	Right-handed 310
Helix 13	AB4	A	491	506	Right-handed alpha
Helix 14	AB5	B	75	97	Right-handed alpha
Helix 15	AB6	B	138	142	Right-handed 310
Helix 16	AB7	B	148	158	Right-handed alpha
Helix 17	AB8	B	162	171	Right-handed alpha
Helix 18	AB9	B	195	203	Right-handed alpha
Helix 19	AC1	B	217	240	Right-handed alpha
Helix 20	AC2	B	253	263	Right-handed alpha
Helix 21	AC3	B	267	277	Right-handed alpha
Helix 22	AC4	B	277	282	Right-handed alpha
Helix 23	AC5	B	283	285	Right-handed 310
Helix 24	AC6	B	370	372	Right-handed 310
Helix 25	AC7	B	376	379	Right-handed 310
Helix 26	AC8	B	380	385	Right-handed alpha
Helix 27	AC9	B	473	478	Right-handed 310
Helix 28	AD1	B	491	505	Right-handed alpha
Helix 29	AD2	C	75	97	Right-handed alpha
Helix 30	AD3	C	138	142	Right-handed 310
Helix 31	AD4	C	148	158	Right-handed alpha
Helix 32	AD5	C	162	171	Right-handed alpha
Helix 33	AD6	C	195	201	Right-handed alpha
Helix 34	AD7	C	217	241	Right-handed alpha
Helix 35	AD8	C	253	263	Right-handed alpha
Helix 36	AD9	C	267	277	Right-handed alpha
Helix 37	AE1	C	277	282	Right-handed alpha
Helix 38	AE2	C	370	372	Right-handed 310
Helix 39	AE3	C	380	385	Right-handed alpha
Helix 40	AE4	C	473	478	Right-handed 310
Helix 41	AE5	C	479	483	Right-handed 310
Helix 42	AE6	C	491	505	Right-handed alpha
Helix 43	AE7	E	47	51	Right-handed 310
Helix 44	AE8	E	81	84	Right-handed 310
Helix 45	AE9	E	93	95	Right-handed 310
Helix 46	AF1	E	244	248	Right-handed 310
Helix 47	AF2	F	47	51	Right-handed 310
Helix 48	AF3	F	81	84	Right-handed 310
Helix 49	AF4	F	93	95	Right-handed 310
Helix 50	AF5	F	106	110	Right-handed 310
Helix 51	AF6	F	190	195	Right-handed 310
Helix 52	AF7	F	244	248	Right-handed 310
Helix 53	AF8	G	47	51	Right-handed 310
Helix 54	AF9	G	81	84	Right-handed 310
Helix 55	AG1	G	93	95	Right-handed 310
Helix 56	AG2	G	190	195	Right-handed 310
Helix 57	AG3	G	244	248	Right-handed 310

There are 36 sheets in PDB entry 5U68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	38	49	parallel
Strand 4	A	308	318	anti-parallel
Strand 5	A	340	344	anti-parallel
Strand 6	A	348	352	anti-parallel
Strand 7	A	373	376	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	38	49	parallel
Strand 4	A	29	33	anti-parallel
Strand 5	A	465	469	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	53	60	parallel
Strand 4	A	296	303	anti-parallel
Strand 5	A	286	293	anti-parallel
Strand 6	A	243	244	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	395	398	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	411	416	anti-parallel
Strand 3	A	438	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	422	426	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	361	first strand
Strand 2	B	364	368	anti-parallel
Strand 3	B	38	49	parallel
Strand 4	B	308	318	anti-parallel
Strand 5	B	340	344	anti-parallel
Strand 6	B	349	352	anti-parallel
Strand 7	B	373	375	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	361	first strand
Strand 2	B	364	368	anti-parallel
Strand 3	B	38	49	parallel
Strand 4	B	29	33	anti-parallel
Strand 5	B	465	469	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	B	53	60	parallel
Strand 4	B	296	303	anti-parallel
Strand 5	B	286	291	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	322	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	395	398	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	438	443	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	422	426	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	38	49	parallel
Strand 4	C	308	318	anti-parallel
Strand 5	C	340	344	anti-parallel
Strand 6	C	348	352	anti-parallel
Strand 7	C	373	376	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	38	49	parallel
Strand 4	C	29	33	anti-parallel
Strand 5	C	466	469	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	180	first strand
Strand 2	C	186	194	anti-parallel
Strand 3	C	53	60	parallel
Strand 4	C	296	303	anti-parallel
Strand 5	C	286	293	anti-parallel
Strand 6	C	243	244	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	322	first strand
Strand 2	C	333	336	anti-parallel
Strand 3	C	395	398	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	411	416	anti-parallel
Strand 3	C	438	443	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	434	first strand
Strand 2	C	422	426	anti-parallel
Strand 3	C	449	452	anti-parallel
Strand 4	C	455	458	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	26	first strand
Strand 2	E	36	44	anti-parallel
Strand 3	E	97	103	anti-parallel
Strand 4	E	87	92	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	137	141	parallel
Strand 3	E	111	119	anti-parallel
Strand 4	E	52	58	anti-parallel
Strand 5	E	64	70	anti-parallel
Strand 6	E	77	79	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	137	141	parallel
Strand 3	E	111	119	anti-parallel
Strand 4	E	129	133	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	169	first strand
Strand 2	E	180	186	anti-parallel
Strand 3	E	235	241	anti-parallel
Strand 4	E	228	232	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	175	first strand
Strand 2	E	269	272	parallel
Strand 3	E	249	255	anti-parallel
Strand 4	E	199	203	anti-parallel
Strand 5	E	210	213	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	175	first strand
Strand 2	E	269	272	parallel
Strand 3	E	249	255	anti-parallel
Strand 4	E	263	264	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	24	first strand
Strand 2	F	36	44	anti-parallel
Strand 3	F	97	103	anti-parallel
Strand 4	F	87	92	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	137	141	parallel
Strand 3	F	111	119	anti-parallel
Strand 4	F	52	58	anti-parallel
Strand 5	F	64	70	anti-parallel
Strand 6	F	77	79	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	137	141	parallel
Strand 3	F	111	119	anti-parallel
Strand 4	F	129	133	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	169	first strand
Strand 2	F	180	186	anti-parallel
Strand 3	F	235	241	anti-parallel
Strand 4	F	227	232	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	175	first strand
Strand 2	F	268	272	parallel
Strand 3	F	249	255	anti-parallel
Strand 4	F	199	203	anti-parallel
Strand 5	F	210	213	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	175	first strand
Strand 2	F	268	272	parallel
Strand 3	F	249	255	anti-parallel
Strand 4	F	263	264	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	26	first strand
Strand 2	G	36	44	anti-parallel
Strand 3	G	97	103	anti-parallel
Strand 4	G	87	92	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	137	141	parallel
Strand 3	G	111	119	anti-parallel
Strand 4	G	53	58	anti-parallel
Strand 5	G	64	70	anti-parallel
Strand 6	G	77	79	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	31	first strand
Strand 2	G	137	141	parallel
Strand 3	G	111	119	anti-parallel
Strand 4	G	129	133	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	169	first strand
Strand 2	G	180	186	anti-parallel
Strand 3	G	235	241	anti-parallel
Strand 4	G	227	232	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	175	first strand
Strand 2	G	268	272	parallel
Strand 3	G	249	255	anti-parallel
Strand 4	G	198	203	anti-parallel
Strand 5	G	210	213	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	175	first strand
Strand 2	G	268	272	parallel
Strand 3	G	249	255	anti-parallel
Strand 4	G	263	264	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U68

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U68