Analysis of interatomic Contacts of Structural Units in PDB entry:
5U6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U6B entry

There are 4 chains in PDB entry 5U6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 521	ALA 813
B	GLY 512	PRO 811
C	GLU 521	ALA 813
D	GLY 512	PRO 811

There are 52 helices in PDB entry 5U6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	523	530	Right-handed alpha
Helix 2	AA2	A	532	534	Right-handed 310
Helix 3	AA3	A	575	591	Right-handed alpha
Helix 4	AA4	A	627	638	Right-handed alpha
Helix 5	AA5	A	645	666	Right-handed alpha
Helix 6	AA6	A	674	676	Right-handed 310
Helix 7	AA7	A	712	716	Right-handed 310
Helix 8	AA8	A	717	724	Right-handed alpha
Helix 9	AA9	A	727	744	Right-handed alpha
Helix 10	AB1	A	754	764	Right-handed alpha
Helix 11	AB2	A	775	786	Right-handed alpha
Helix 12	AB3	A	789	793	Right-handed 310
Helix 13	AB4	A	795	810	Right-handed alpha
Helix 14	AB5	B	519	527	Right-handed alpha
Helix 15	AB6	B	532	534	Right-handed 310
Helix 16	AB7	B	575	583	Right-handed alpha
Helix 17	AB8	B	583	590	Right-handed alpha
Helix 18	AB9	B	627	634	Right-handed alpha
Helix 19	AC1	B	645	666	Right-handed alpha
Helix 20	AC2	B	674	676	Right-handed 310
Helix 21	AC3	B	717	724	Right-handed alpha
Helix 22	AC4	B	727	745	Right-handed alpha
Helix 23	AC5	B	754	764	Right-handed alpha
Helix 24	AC6	B	775	786	Right-handed alpha
Helix 25	AC7	B	789	793	Right-handed 310
Helix 26	AC8	B	795	810	Right-handed alpha
Helix 27	AC9	C	523	530	Right-handed alpha
Helix 28	AD1	C	532	534	Right-handed 310
Helix 29	AD2	C	575	591	Right-handed alpha
Helix 30	AD3	C	627	638	Right-handed alpha
Helix 31	AD4	C	645	666	Right-handed alpha
Helix 32	AD5	C	674	676	Right-handed 310
Helix 33	AD6	C	712	716	Right-handed 310
Helix 34	AD7	C	717	724	Right-handed alpha
Helix 35	AD8	C	727	744	Right-handed alpha
Helix 36	AD9	C	754	764	Right-handed alpha
Helix 37	AE1	C	775	786	Right-handed alpha
Helix 38	AE2	C	789	793	Right-handed 310
Helix 39	AE3	C	795	810	Right-handed alpha
Helix 40	AE4	D	519	526	Right-handed alpha
Helix 41	AE5	D	532	534	Right-handed 310
Helix 42	AE6	D	575	583	Right-handed alpha
Helix 43	AE7	D	583	590	Right-handed alpha
Helix 44	AE8	D	627	634	Right-handed alpha
Helix 45	AE9	D	645	666	Right-handed alpha
Helix 46	AF1	D	674	676	Right-handed 310
Helix 47	AF2	D	717	724	Right-handed alpha
Helix 48	AF3	D	727	744	Right-handed alpha
Helix 49	AF4	D	754	764	Right-handed alpha
Helix 50	AF5	D	775	786	Right-handed alpha
Helix 51	AF6	D	789	793	Right-handed 310
Helix 52	AF7	D	795	810	Right-handed alpha

There are 10 sheets in PDB entry 5U6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	544	first strand
Strand 2	A	548	556	anti-parallel
Strand 3	A	561	569	anti-parallel
Strand 4	A	616	621	anti-parallel
Strand 5	A	602	605	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	680	first strand
Strand 2	A	686	688	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	531	first strand
Strand 2	B	602	604	parallel
Strand 3	B	617	621	anti-parallel
Strand 4	B	562	567	anti-parallel
Strand 5	B	549	555	anti-parallel
Strand 6	B	536	544	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	668	669	first strand
Strand 2	B	695	696	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	680	first strand
Strand 2	B	686	688	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	544	first strand
Strand 2	C	548	557	anti-parallel
Strand 3	C	560	569	anti-parallel
Strand 4	C	616	621	anti-parallel
Strand 5	C	602	605	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	678	680	first strand
Strand 2	C	686	688	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	531	first strand
Strand 2	D	602	604	parallel
Strand 3	D	617	621	anti-parallel
Strand 4	D	562	567	anti-parallel
Strand 5	D	549	555	anti-parallel
Strand 6	D	536	544	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	668	669	first strand
Strand 2	D	695	696	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	678	680	first strand
Strand 2	D	686	688	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U6B