Analysis of interatomic Contacts of Structural Units in PDB entry:
5U6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U6C entry

There are 2 chains in PDB entry 5U6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 572VAL 864
B
 ASN 575PRO 862
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5U6C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
574 581Right-handed alpha
Helix 2
AA2
A
583 585Right-handed 310
Helix 3
AA3
A
628 644Right-handed alpha
Helix 4
AA4
A
678 686Right-handed alpha
Helix 5
AA5
A
696 717Right-handed alpha
Helix 6
AA6
A
725 727Right-handed 310
Helix 7
AA7
A
763 767Right-handed 310
Helix 8
AA8
A
768 774Right-handed alpha
Helix 9
AA9
A
778 795Right-handed alpha
Helix 10
AB1
A
805 807Right-handed 310
Helix 11
AB2
A
808 815Right-handed alpha
Helix 12
AB3
A
826 836Right-handed alpha
Helix 13
AB4
A
840 844Right-handed 310
Helix 14
AB5
A
846 860Right-handed alpha
Helix 15
AB6
B
576 581Right-handed alpha
Helix 16
AB7
B
583 585Right-handed 310
Helix 17
AB8
B
632 643Right-handed alpha
Helix 18
AB9
B
678 686Right-handed alpha
Helix 19
AC1
B
696 717Right-handed alpha
Helix 20
AC2
B
725 727Right-handed 310
Helix 21
AC3
B
763 767Right-handed 310
Helix 22
AC4
B
768 774Right-handed alpha
Helix 23
AC5
B
778 795Right-handed alpha
Helix 24
AC6
B
805 807Right-handed 310
Helix 25
AC7
B
808 815Right-handed alpha
Helix 26
AC8
B
826 836Right-handed alpha
Helix 27
AC9
B
840 844Right-handed 310
Helix 28
AD1
B
846 861Right-handed alpha
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There are 4 sheets in PDB entry 5U6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 594first strand
Strand 2
A
601 607anti-parallel
Strand 3
A
613 620anti-parallel
Strand 4
A
666 672anti-parallel
Strand 5
A
654 658anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
729 731first strand
Strand 2
A
737 739anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 594first strand
Strand 2
B
601 607anti-parallel
Strand 3
B
613 620anti-parallel
Strand 4
B
665 672anti-parallel
Strand 5
B
654 659anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
729 731first strand
Strand 2
B
737 739anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il