Analysis of interatomic Contacts of Structural Units in PDB entry:
5U6K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U6K entry

There are 7 chains in PDB entry 5U6K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 554	ASN 743
B	GLY 554	ASN 743
C	GLY 554	ASN 743
D	GLY 554	ASN 743
E	GLU 553	ASN 743
F	GLU 553	ASN 743
G	GLU 553	LEU 716

There are 57 helices in PDB entry 5U6K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	567	580	Right-handed alpha
Helix 2	AA2	A	616	626	Right-handed alpha
Helix 3	AA3	A	630	638	Right-handed 310
Helix 4	AA4	A	660	674	Right-handed alpha
Helix 5	AA5	A	687	691	Right-handed 310
Helix 6	AA6	A	705	714	Right-handed alpha
Helix 7	AA7	A	720	731	Right-handed alpha
Helix 8	AA8	A	735	740	Right-handed 310
Helix 9	AA9	B	567	580	Right-handed alpha
Helix 10	AB1	B	616	626	Right-handed alpha
Helix 11	AB2	B	630	638	Right-handed 310
Helix 12	AB3	B	661	674	Right-handed alpha
Helix 13	AB4	B	705	714	Right-handed alpha
Helix 14	AB5	B	720	731	Right-handed alpha
Helix 15	AB6	B	735	740	Right-handed 310
Helix 16	AB7	C	567	580	Right-handed alpha
Helix 17	AB8	C	616	626	Right-handed alpha
Helix 18	AB9	C	630	638	Right-handed 310
Helix 19	AC1	C	661	674	Right-handed alpha
Helix 20	AC2	C	705	714	Right-handed alpha
Helix 21	AC3	C	720	731	Right-handed alpha
Helix 22	AC4	C	735	740	Right-handed 310
Helix 23	AC5	D	567	580	Right-handed alpha
Helix 24	AC6	D	616	626	Right-handed alpha
Helix 25	AC7	D	630	638	Right-handed 310
Helix 26	AC8	D	660	674	Right-handed alpha
Helix 27	AC9	D	705	714	Right-handed alpha
Helix 28	AD1	D	720	731	Right-handed alpha
Helix 29	AD2	D	735	740	Right-handed 310
Helix 30	AD3	E	567	580	Right-handed alpha
Helix 31	AD4	E	616	625	Right-handed alpha
Helix 32	AD5	E	630	638	Right-handed 310
Helix 33	AD6	E	661	674	Right-handed alpha
Helix 34	AD7	E	705	714	Right-handed alpha
Helix 35	AD8	E	720	731	Right-handed alpha
Helix 36	AD9	E	735	740	Right-handed 310
Helix 37	AE1	F	567	581	Right-handed alpha
Helix 38	AE2	F	616	626	Right-handed alpha
Helix 39	AE3	F	630	638	Right-handed 310
Helix 40	AE4	F	661	674	Right-handed alpha
Helix 41	AE5	F	705	714	Right-handed alpha
Helix 42	AE6	F	720	731	Right-handed alpha
Helix 43	AE7	F	735	740	Right-handed 310
Helix 44	AE8	G	567	581	Right-handed alpha
Helix 45	AE9	G	616	626	Right-handed alpha
Helix 46	AF1	G	630	638	Right-handed 310
Helix 47	AF2	G	661	674	Right-handed alpha
Helix 48	AF3	G	705	714	Right-handed alpha
Helix 49	AF4	G	720	731	Right-handed alpha
Helix 50	AF5	G	735	740	Right-handed 310
Helix 51	AF6	H	567	580	Right-handed alpha
Helix 52	AF7	H	616	626	Right-handed alpha
Helix 53	AF8	H	630	638	Right-handed 310
Helix 54	AF9	H	661	674	Right-handed alpha
Helix 55	AG1	H	705	714	Right-handed alpha
Helix 56	AG2	H	720	731	Right-handed alpha
Helix 57	AG3	H	735	740	Right-handed 310

There are 16 sheets in PDB entry 5U6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	585	first strand
Strand 2	A	560	563	parallel
Strand 3	A	596	599	parallel
Strand 4	A	612	615	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	678	first strand
Strand 2	A	653	656	parallel
Strand 3	A	697	699	parallel
Strand 4	A	718	719	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	585	first strand
Strand 2	B	560	563	parallel
Strand 3	B	596	599	parallel
Strand 4	B	612	615	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	677	678	first strand
Strand 2	B	653	656	parallel
Strand 3	B	697	699	parallel
Strand 4	B	718	719	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	584	585	first strand
Strand 2	C	560	563	parallel
Strand 3	C	596	599	parallel
Strand 4	C	612	615	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	677	678	first strand
Strand 2	C	653	656	parallel
Strand 3	C	697	699	parallel
Strand 4	C	718	719	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	584	585	first strand
Strand 2	D	560	563	parallel
Strand 3	D	596	599	parallel
Strand 4	D	612	615	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	677	678	first strand
Strand 2	D	653	656	parallel
Strand 3	D	697	699	parallel
Strand 4	D	718	719	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	584	585	first strand
Strand 2	E	560	563	parallel
Strand 3	E	594	599	parallel
Strand 4	E	610	615	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	677	678	first strand
Strand 2	E	653	656	parallel
Strand 3	E	697	699	parallel
Strand 4	E	718	719	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	584	585	first strand
Strand 2	F	560	563	parallel
Strand 3	F	594	599	parallel
Strand 4	F	610	615	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	677	678	first strand
Strand 2	F	653	656	parallel
Strand 3	F	697	699	parallel
Strand 4	F	718	719	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	584	585	first strand
Strand 2	G	560	563	parallel
Strand 3	G	594	599	parallel
Strand 4	G	610	615	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	677	678	first strand
Strand 2	G	653	656	parallel
Strand 3	G	697	699	parallel
Strand 4	G	718	719	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	584	585	first strand
Strand 2	H	560	563	parallel
Strand 3	H	594	599	parallel
Strand 4	H	610	615	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	654	656	first strand
Strand 2	H	697	699	parallel
Strand 3	H	718	719	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U6K

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U6K