Analysis of interatomic Contacts of Structural Units in PDB entry:
5U6P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U6P entry

There are 8 chains in PDB entry 5U6P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 94	ASP 608
E	UNK 1	UNK 19
B	MET 94	ASP 608
F	UNK 1	UNK 19
C	MET 94	ASP 608
G	UNK 1	UNK 19
D	MET 94	ASP 608
H	UNK 1	UNK 19

There are108 helices in PDB entry 5U6P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	103	Right-handed alpha
Helix 2	AA2	A	107	115	Right-handed alpha
Helix 3	AA3	A	116	128	Right-handed alpha
Helix 4	AA4	A	139	167	Right-handed alpha
Helix 5	AA5	A	172	196	Right-handed alpha
Helix 6	AA6	A	211	219	Right-handed alpha
Helix 7	AA7	A	221	230	Right-handed alpha
Helix 8	AA8	A	231	242	Right-handed alpha
Helix 9	AA9	A	253	265	Right-handed alpha
Helix 10	AB1	A	266	269	Right-handed 310
Helix 11	AB2	A	270	290	Right-handed alpha
Helix 12	AB3	A	292	323	Right-handed alpha
Helix 13	AB4	A	329	335	Right-handed alpha
Helix 14	AB5	A	340	358	Right-handed alpha
Helix 15	AB6	A	368	401	Right-handed alpha
Helix 16	AB7	A	401	422	Right-handed alpha
Helix 17	AB8	A	424	440	Right-handed alpha
Helix 18	AB9	A	445	453	Right-handed alpha
Helix 19	AC1	A	454	466	Right-handed alpha
Helix 20	AC2	A	466	473	Right-handed alpha
Helix 21	AC3	A	473	479	Right-handed alpha
Helix 22	AC4	A	480	491	Right-handed alpha
Helix 23	AC5	A	540	546	Right-handed alpha
Helix 24	AC6	A	566	576	Right-handed alpha
Helix 25	AC7	A	576	595	Right-handed alpha
Helix 26	AC8	A	598	608	Right-handed alpha
Helix 27	AC9	E	2	19	Right-handed alpha
Helix 28	AD1	B	95	103	Right-handed alpha
Helix 29	AD2	B	107	115	Right-handed alpha
Helix 30	AD3	B	116	128	Right-handed alpha
Helix 31	AD4	B	139	167	Right-handed alpha
Helix 32	AD5	B	172	196	Right-handed alpha
Helix 33	AD6	B	211	219	Right-handed alpha
Helix 34	AD7	B	221	230	Right-handed alpha
Helix 35	AD8	B	231	242	Right-handed alpha
Helix 36	AD9	B	253	265	Right-handed alpha
Helix 37	AE1	B	266	269	Right-handed 310
Helix 38	AE2	B	270	290	Right-handed alpha
Helix 39	AE3	B	292	323	Right-handed alpha
Helix 40	AE4	B	329	335	Right-handed alpha
Helix 41	AE5	B	340	358	Right-handed alpha
Helix 42	AE6	B	368	401	Right-handed alpha
Helix 43	AE7	B	401	422	Right-handed alpha
Helix 44	AE8	B	424	440	Right-handed alpha
Helix 45	AE9	B	445	453	Right-handed alpha
Helix 46	AF1	B	454	466	Right-handed alpha
Helix 47	AF2	B	466	473	Right-handed alpha
Helix 48	AF3	B	473	479	Right-handed alpha
Helix 49	AF4	B	480	491	Right-handed alpha
Helix 50	AF5	B	540	546	Right-handed alpha
Helix 51	AF6	B	566	576	Right-handed alpha
Helix 52	AF7	B	576	595	Right-handed alpha
Helix 53	AF8	B	598	608	Right-handed alpha
Helix 54	AF9	F	2	19	Right-handed alpha
Helix 55	AG1	C	95	103	Right-handed alpha
Helix 56	AG2	C	107	115	Right-handed alpha
Helix 57	AG3	C	116	128	Right-handed alpha
Helix 58	AG4	C	139	167	Right-handed alpha
Helix 59	AG5	C	172	196	Right-handed alpha
Helix 60	AG6	C	211	219	Right-handed alpha
Helix 61	AG7	C	221	230	Right-handed alpha
Helix 62	AG8	C	231	242	Right-handed alpha
Helix 63	AG9	C	253	265	Right-handed alpha
Helix 64	AH1	C	266	269	Right-handed 310
Helix 65	AH2	C	270	290	Right-handed alpha
Helix 66	AH3	C	292	323	Right-handed alpha
Helix 67	AH4	C	329	335	Right-handed alpha
Helix 68	AH5	C	340	358	Right-handed alpha
Helix 69	AH6	C	368	401	Right-handed alpha
Helix 70	AH7	C	401	422	Right-handed alpha
Helix 71	AH8	C	424	440	Right-handed alpha
Helix 72	AH9	C	445	453	Right-handed alpha
Helix 73	AI1	C	454	466	Right-handed alpha
Helix 74	AI2	C	466	473	Right-handed alpha
Helix 75	AI3	C	473	479	Right-handed alpha
Helix 76	AI4	C	480	491	Right-handed alpha
Helix 77	AI5	C	540	546	Right-handed alpha
Helix 78	AI6	C	566	576	Right-handed alpha
Helix 79	AI7	C	576	595	Right-handed alpha
Helix 80	AI8	C	598	608	Right-handed alpha
Helix 81	AI9	G	2	19	Right-handed alpha
Helix 82	AJ1	D	95	103	Right-handed alpha
Helix 83	AJ2	D	107	115	Right-handed alpha
Helix 84	AJ3	D	116	128	Right-handed alpha
Helix 85	AJ4	D	139	167	Right-handed alpha
Helix 86	AJ5	D	172	196	Right-handed alpha
Helix 87	AJ6	D	211	219	Right-handed alpha
Helix 88	AJ7	D	221	230	Right-handed alpha
Helix 89	AJ8	D	231	242	Right-handed alpha
Helix 90	AJ9	D	253	265	Right-handed alpha
Helix 91	AK1	D	266	269	Right-handed 310
Helix 92	AK2	D	270	290	Right-handed alpha
Helix 93	AK3	D	292	323	Right-handed alpha
Helix 94	AK4	D	329	335	Right-handed alpha
Helix 95	AK5	D	340	358	Right-handed alpha
Helix 96	AK6	D	368	401	Right-handed alpha
Helix 97	AK7	D	401	422	Right-handed alpha
Helix 98	AK8	D	424	440	Right-handed alpha
Helix 99	AK9	D	445	453	Right-handed alpha
Helix 100	AL1	D	454	466	Right-handed alpha
Helix 101	AL2	D	466	473	Right-handed alpha
Helix 102	AL3	D	473	479	Right-handed alpha
Helix 103	AL4	D	480	491	Right-handed alpha
Helix 104	AL5	D	540	546	Right-handed alpha
Helix 105	AL6	D	566	576	Right-handed alpha
Helix 106	AL7	D	576	595	Right-handed alpha
Helix 107	AL8	D	598	608	Right-handed alpha
Helix 108	AL9	H	2	19	Right-handed alpha

There are 12 sheets in PDB entry 5U6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	496	first strand
Strand 2	A	559	565	anti-parallel
Strand 3	A	511	512	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	496	first strand
Strand 2	A	559	565	anti-parallel
Strand 3	A	515	517	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	503	first strand
Strand 2	A	552	555	anti-parallel
Strand 3	A	520	523	anti-parallel
Strand 4	A	530	532	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	496	first strand
Strand 2	B	559	565	anti-parallel
Strand 3	B	511	512	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	496	first strand
Strand 2	B	559	565	anti-parallel
Strand 3	B	515	517	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	503	first strand
Strand 2	B	552	555	anti-parallel
Strand 3	B	520	523	anti-parallel
Strand 4	B	530	532	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	496	first strand
Strand 2	C	559	565	anti-parallel
Strand 3	C	511	512	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	496	first strand
Strand 2	C	559	565	anti-parallel
Strand 3	C	515	517	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	503	first strand
Strand 2	C	552	555	anti-parallel
Strand 3	C	520	523	anti-parallel
Strand 4	C	530	532	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	496	first strand
Strand 2	D	559	565	anti-parallel
Strand 3	D	511	512	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	496	first strand
Strand 2	D	559	565	anti-parallel
Strand 3	D	515	517	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	501	503	first strand
Strand 2	D	552	555	anti-parallel
Strand 3	D	520	523	anti-parallel
Strand 4	D	530	532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U6P

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U6P