Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U7M entry

There are 6 chains in PDB entry 5U7M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 518	ASP 664
D	GLN 1	PHE 224
E	SER 2	GLU 210
G	ALA 31	VAL 505
H	GLN 1	PRO 211
L	THR 8	ASN 52

There are 23 helices in PDB entry 5U7M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	529	534	Right-handed alpha
Helix 2	AA2	B	536	543	Right-handed alpha
Helix 3	AA3	B	570	595	Right-handed alpha
Helix 4	AA4	B	618	623	Right-handed alpha
Helix 5	AA5	B	627	635	Right-handed alpha
Helix 6	AA6	B	638	662	Right-handed alpha
Helix 7	AA7	D	28	32	Right-handed 310
Helix 8	AA8	D	61	64	Right-handed 310
Helix 9	AA9	D	83	87	Right-handed 310
Helix 10	AB1	E	79	83	Right-handed 310
Helix 11	AB2	E	181	186	Right-handed alpha
Helix 12	AB3	G	98	117	Right-handed alpha
Helix 13	AB4	G	122	126	Right-handed 310
Helix 14	AB5	G	195	198	Right-handed 310
Helix 15	AB6	G	335	350	Right-handed alpha
Helix 16	AB7	G	368	372	Right-handed alpha
Helix 17	AB8	G	388	390	Right-handed 310
Helix 18	AB9	G	474	481	Right-handed alpha
Helix 19	AC1	H	83	87	Right-handed 310
Helix 20	AC2	H	154	156	Right-handed 310
Helix 21	AC3	L	79	83	Right-handed 310
Helix 22	AC4	L	122	127	Right-handed alpha
Helix 23	AC5	L	182	187	Right-handed alpha

There are 32 sheets in PDB entry 5U7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	609	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	G	494	499	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	27	anti-parallel
Strand 3	D	74	82	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	27	anti-parallel
Strand 3	D	74	82	anti-parallel
Strand 4	D	72	72	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	44	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	130	first strand
Strand 2	D	135	143	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	195	200	anti-parallel
Strand 3	D	205	210	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	166	first strand
Strand 2	D	179	182	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	20	24	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	66	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	14	first strand
Strand 2	E	102	106	parallel
Strand 3	E	85	91	anti-parallel
Strand 4	E	32	37	anti-parallel
Strand 5	E	45	48	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	130	139	anti-parallel
Strand 3	E	172	180	anti-parallel
Strand 4	E	159	161	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	130	139	anti-parallel
Strand 3	E	172	180	anti-parallel
Strand 4	E	165	166	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	150	first strand
Strand 2	E	191	197	anti-parallel
Strand 3	E	200	206	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	83	86	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	236	239	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	155	first strand
Strand 2	G	176	177	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	160	first strand
Strand 2	G	171	173	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	183	first strand
Strand 2	G	191	193	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	203	first strand
Strand 2	G	433	435	parallel
Strand 3	G	423	425	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	443	456	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	413	421	anti-parallel
Strand 6	G	381	386	anti-parallel
Strand 7	G	373	378	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	274	first strand
Strand 2	G	284	298	anti-parallel
Strand 3	G	443	456	anti-parallel
Strand 4	G	465	470	anti-parallel
Strand 5	G	358	361	parallel
Strand 6	G	393	395	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	308	first strand
Strand 2	G	316	320	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	88	100	anti-parallel
Strand 4	H	100	100	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	119	first strand
Strand 2	H	133	143	anti-parallel
Strand 3	H	174	183	anti-parallel
Strand 4	H	161	163	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	193	198	anti-parallel
Strand 3	H	203	208	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	89	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	44	48	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	26	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	64	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	131	138	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	160	162	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	119	first strand
Strand 2	L	131	138	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	166	167	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	197	anti-parallel
Strand 4	L	202	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U7M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7M