Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U7P entry

There is 1 chain in PDB entry 5U7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4GLU 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5U7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed 310
Helix 2
AA2
A
54 61Right-handed alpha
Helix 3
AA3
A
62 73Right-handed alpha
Helix 4
AA4
A
74 80Right-handed 310
Helix 5
AA5
A
89 94Right-handed 310
Helix 6
AA6
A
97 114Right-handed alpha
Helix 7
AA7
A
127 143Right-handed alpha
Helix 8
AA8
A
149 153Right-handed 310
Helix 9
AA9
A
210 221Right-handed alpha
Helix 10
AB1
A
255 268Right-handed alpha
Helix 11
AB2
A
289 293Right-handed 310
Helix 12
AB3
A
300 308Right-handed alpha
Helix 13
AB4
A
321 333Right-handed alpha
Helix 14
AB5
A
336 344Right-handed alpha
Helix 15
AB6
A
344 350Right-handed alpha
Helix 16
AB7
A
352 354Right-handed 310
Helix 17
AB8
A
355 368Right-handed alpha
Helix 18
AB9
A
396 407Right-handed alpha
Helix 19
AC1
A
408 412Right-handed 310
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There are 4 sheets in PDB entry 5U7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
6 13anti-parallel
Strand 4
A
82 87parallel
Strand 5
A
117 125parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 194first strand
Strand 2
A
197 207anti-parallel
Strand 3
A
163 170anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
295 299parallel
Strand 6
A
379 382parallel
Strand 7
A
317 320anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
243 248anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 387first strand
Strand 2
A
390 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il