Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U7Q entry

There are 4 chains in PDB entry 5U7Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 25	ARG 417
B	ARG 28	ARG 417
C	GLY 23	ARG 417
D	GLN 27	LYS 96

There are 84 helices in PDB entry 5U7Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	36	Right-handed alpha
Helix 2	AA2	A	42	58	Right-handed alpha
Helix 3	AA3	A	61	64	Right-handed 310
Helix 4	AA4	A	65	86	Right-handed alpha
Helix 5	AA5	A	88	90	Right-handed 310
Helix 6	AA6	A	125	131	Right-handed alpha
Helix 7	AA7	A	136	147	Right-handed alpha
Helix 8	AA8	A	176	182	Right-handed alpha
Helix 9	AA9	A	187	208	Right-handed alpha
Helix 10	AB1	A	216	218	Right-handed 310
Helix 11	AB2	A	253	257	Right-handed 310
Helix 12	AB3	A	258	264	Right-handed alpha
Helix 13	AB4	A	265	267	Right-handed 310
Helix 14	AB5	A	273	290	Right-handed alpha
Helix 15	AB6	A	298	308	Right-handed alpha
Helix 16	AB7	A	308	313	Right-handed alpha
Helix 17	AB8	A	322	333	Right-handed alpha
Helix 18	AB9	A	335	339	Right-handed 310
Helix 19	AC1	A	345	350	Right-handed alpha
Helix 20	AC2	A	351	355	Right-handed 310
Helix 21	AC3	A	363	367	Right-handed 310
Helix 22	AC4	A	407	411	Right-handed 310
Helix 23	AC5	B	29	36	Right-handed alpha
Helix 24	AC6	B	42	58	Right-handed alpha
Helix 25	AC7	B	61	64	Right-handed 310
Helix 26	AC8	B	65	86	Right-handed alpha
Helix 27	AC9	B	88	90	Right-handed 310
Helix 28	AD1	B	125	131	Right-handed alpha
Helix 29	AD2	B	136	147	Right-handed alpha
Helix 30	AD3	B	176	182	Right-handed alpha
Helix 31	AD4	B	187	208	Right-handed alpha
Helix 32	AD5	B	216	218	Right-handed 310
Helix 33	AD6	B	258	265	Right-handed alpha
Helix 34	AD7	B	273	290	Right-handed alpha
Helix 35	AD8	B	298	308	Right-handed alpha
Helix 36	AD9	B	308	313	Right-handed alpha
Helix 37	AE1	B	322	333	Right-handed alpha
Helix 38	AE2	B	335	339	Right-handed 310
Helix 39	AE3	B	345	350	Right-handed alpha
Helix 40	AE4	B	351	355	Right-handed 310
Helix 41	AE5	B	363	367	Right-handed 310
Helix 42	AE6	B	407	411	Right-handed 310
Helix 43	AE7	C	26	36	Right-handed alpha
Helix 44	AE8	C	42	58	Right-handed alpha
Helix 45	AE9	C	61	64	Right-handed 310
Helix 46	AF1	C	65	86	Right-handed alpha
Helix 47	AF2	C	88	90	Right-handed 310
Helix 48	AF3	C	125	131	Right-handed alpha
Helix 49	AF4	C	136	147	Right-handed alpha
Helix 50	AF5	C	176	182	Right-handed alpha
Helix 51	AF6	C	187	208	Right-handed alpha
Helix 52	AF7	C	216	218	Right-handed 310
Helix 53	AF8	C	253	257	Right-handed 310
Helix 54	AF9	C	258	264	Right-handed alpha
Helix 55	AG1	C	265	267	Right-handed 310
Helix 56	AG2	C	273	290	Right-handed alpha
Helix 57	AG3	C	298	308	Right-handed alpha
Helix 58	AG4	C	308	313	Right-handed alpha
Helix 59	AG5	C	322	333	Right-handed alpha
Helix 60	AG6	C	335	339	Right-handed 310
Helix 61	AG7	C	345	350	Right-handed alpha
Helix 62	AG8	C	351	355	Right-handed 310
Helix 63	AG9	C	363	367	Right-handed 310
Helix 64	AH1	C	407	411	Right-handed 310
Helix 65	AH2	D	28	36	Right-handed alpha
Helix 66	AH3	D	42	58	Right-handed alpha
Helix 67	AH4	D	61	64	Right-handed 310
Helix 68	AH5	D	65	86	Right-handed alpha
Helix 69	AH6	D	88	90	Right-handed 310
Helix 70	AH7	D	125	131	Right-handed alpha
Helix 71	AH8	D	136	147	Right-handed alpha
Helix 72	AH9	D	176	182	Right-handed alpha
Helix 73	AI1	D	187	208	Right-handed alpha
Helix 74	AI2	D	216	218	Right-handed 310
Helix 75	AI3	D	258	265	Right-handed alpha
Helix 76	AI4	D	273	290	Right-handed alpha
Helix 77	AI5	D	298	306	Right-handed alpha
Helix 78	AI6	D	308	313	Right-handed alpha
Helix 79	AI7	D	322	333	Right-handed alpha
Helix 80	AI8	D	335	339	Right-handed 310
Helix 81	AI9	D	345	350	Right-handed alpha
Helix 82	AJ1	D	351	355	Right-handed 310
Helix 83	AJ2	D	363	367	Right-handed 310
Helix 84	AJ3	D	407	411	Right-handed 310

There are 16 sheets in PDB entry 5U7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	100	first strand
Strand 2	A	105	111	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	164	169	anti-parallel
Strand 5	A	155	160	anti-parallel
Strand 6	A	415	416	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	237	238	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	228	230	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	247	first strand
Strand 2	A	269	271	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	100	first strand
Strand 2	B	105	111	anti-parallel
Strand 3	B	117	124	anti-parallel
Strand 4	B	164	169	anti-parallel
Strand 5	B	155	160	anti-parallel
Strand 6	B	415	416	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	237	238	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	222	first strand
Strand 2	B	228	230	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	246	first strand
Strand 2	B	270	272	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	100	first strand
Strand 2	C	105	111	anti-parallel
Strand 3	C	117	124	anti-parallel
Strand 4	C	164	169	anti-parallel
Strand 5	C	155	160	anti-parallel
Strand 6	C	415	416	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	237	238	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	222	first strand
Strand 2	C	228	230	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	269	272	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	100	first strand
Strand 2	D	105	111	anti-parallel
Strand 3	D	117	124	anti-parallel
Strand 4	D	164	169	anti-parallel
Strand 5	D	155	160	anti-parallel
Strand 6	D	415	416	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	237	238	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	222	first strand
Strand 2	D	228	230	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	245	first strand
Strand 2	D	271	272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U7Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7Q