Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U7V entry

There is 1 chain in PDB entry 5U7V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5LEU 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5U7V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed 310
Helix 2
AA2
A
54 62Right-handed alpha
Helix 3
AA3
A
62 73Right-handed alpha
Helix 4
AA4
A
74 81Right-handed 310
Helix 5
AA5
A
89 94Right-handed 310
Helix 6
AA6
A
97 114Right-handed alpha
Helix 7
AA7
A
127 144Right-handed alpha
Helix 8
AA8
A
149 153Right-handed 310
Helix 9
AA9
A
171 177Right-handed alpha
Helix 10
AB1
A
210 223Right-handed alpha
Helix 11
AB2
A
255 268Right-handed alpha
Helix 12
AB3
A
289 293Right-handed 310
Helix 13
AB4
A
300 308Right-handed alpha
Helix 14
AB5
A
321 333Right-handed alpha
Helix 15
AB6
A
336 344Right-handed alpha
Helix 16
AB7
A
344 350Right-handed alpha
Helix 17
AB8
A
352 354Right-handed 310
Helix 18
AB9
A
355 369Right-handed alpha
Helix 19
AC1
A
395 406Right-handed alpha
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There are 5 sheets in PDB entry 5U7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
40 44anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
6 13anti-parallel
Strand 4
A
83 87parallel
Strand 5
A
123 125parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
198 207anti-parallel
Strand 3
A
163 170anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
295 299parallel
Strand 6
A
379 382parallel
Strand 7
A
317 320anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
243 248anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 387first strand
Strand 2
A
390 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il