Analysis of interatomic Contacts of Structural Units in PDB entry:
5U7X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U7X entry

There is 1 chain in PDB entry 5U7X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 LEU 3PHE 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5U7X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
47 52Right-handed 310
Helix 2
AA2
F
54 62Right-handed alpha
Helix 3
AA3
F
62 73Right-handed alpha
Helix 4
AA4
F
74 80Right-handed 310
Helix 5
AA5
F
88 93Right-handed alpha
Helix 6
AA6
F
96 114Right-handed alpha
Helix 7
AA7
F
127 143Right-handed alpha
Helix 8
AA8
F
149 153Right-handed 310
Helix 9
AA9
F
171 177Right-handed alpha
Helix 10
AB1
F
210 221Right-handed alpha
Helix 11
AB2
F
255 267Right-handed alpha
Helix 12
AB3
F
289 293Right-handed 310
Helix 13
AB4
F
300 309Right-handed alpha
Helix 14
AB5
F
320 332Right-handed alpha
Helix 15
AB6
F
334 342Right-handed alpha
Helix 16
AB7
F
349 351Right-handed 310
Helix 17
AB8
F
352 366Right-handed alpha
Helix 18
AB9
F
393 403Right-handed alpha
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There are 4 sheets in PDB entry 5U7X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
40 44first strand
Strand 2
F
18 26anti-parallel
Strand 3
F
5 13anti-parallel
Strand 4
F
82 87parallel
Strand 5
F
117 125parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
315 318first strand
Strand 2
F
376 379anti-parallel
Strand 3
F
295 299parallel
Strand 4
F
155 159parallel
Strand 5
F
163 170anti-parallel
Strand 6
F
197 207anti-parallel
Strand 7
F
189 194anti-parallel
Strand 8
F
412 413anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
235 240first strand
Strand 2
F
243 248anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
381 384first strand
Strand 2
F
387 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il