Analysis of interatomic Contacts of Structural Units in PDB entry:
5U84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U84 entry

There are 2 chains in PDB entry 5U84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 30TRP 395
B
 ASP 30TRP 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5U84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 61Right-handed 310
Helix 2
AA2
A
62 67Right-handed alpha
Helix 3
AA3
A
69 88Right-handed alpha
Helix 4
AA4
A
92 100Right-handed alpha
Helix 5
AA5
A
100 108Right-handed alpha
Helix 6
AA6
A
109 124Right-handed alpha
Helix 7
AA7
A
126 137Right-handed alpha
Helix 8
AA8
A
174 183Right-handed alpha
Helix 9
AA9
A
233 240Right-handed alpha
Helix 10
AB1
A
253 260Right-handed alpha
Helix 11
AB2
A
262 273Right-handed alpha
Helix 12
AB3
A
308 312Right-handed 310
Helix 13
AB4
A
333 345Right-handed alpha
Helix 14
AB5
A
346 349Right-handed 310
Helix 15
AB6
A
350 358Right-handed alpha
Helix 16
AB7
B
57 61Right-handed 310
Helix 17
AB8
B
69 88Right-handed alpha
Helix 18
AB9
B
92 108Right-handed alpha
Helix 19
AC1
B
109 124Right-handed alpha
Helix 20
AC2
B
126 137Right-handed alpha
Helix 21
AC3
B
174 183Right-handed alpha
Helix 22
AC4
B
233 240Right-handed alpha
Helix 23
AC5
B
252 260Right-handed alpha
Helix 24
AC6
B
262 273Right-handed alpha
Helix 25
AC7
B
308 312Right-handed 310
Helix 26
AC8
B
333 345Right-handed alpha
Helix 27
AC9
B
346 349Right-handed 310
Helix 28
AD1
B
350 358Right-handed alpha
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There are 4 sheets in PDB entry 5U84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
380 386anti-parallel
Strand 3
A
368 375anti-parallel
Strand 4
A
155 163anti-parallel
Strand 5
A
141 149anti-parallel
Strand 6
A
315 318anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
186 193parallel
Strand 3
A
196 204anti-parallel
Strand 4
A
212 215anti-parallel
Strand 5
A
219 225anti-parallel
Strand 6
A
279 285anti-parallel
Strand 7
A
291 296anti-parallel
Strand 8
A
301 306anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
380 386anti-parallel
Strand 3
B
368 375anti-parallel
Strand 4
B
155 163anti-parallel
Strand 5
B
141 149anti-parallel
Strand 6
B
315 318anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
186 193parallel
Strand 3
B
196 204anti-parallel
Strand 4
B
212 215anti-parallel
Strand 5
B
219 225anti-parallel
Strand 6
B
279 285anti-parallel
Strand 7
B
291 296anti-parallel
Strand 8
B
301 306anti-parallel
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