Analysis of interatomic Contacts of Structural Units in PDB entry:
5U89

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U89 entry

There are 2 chains in PDB entry 5U89 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 438	PHE 1512
B	THR 6	ASP 69

There are 39 helices in PDB entry 5U89. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	439	445	Right-handed alpha
Helix 2	AA2	A	446	449	Right-handed 310
Helix 3	AA3	A	458	470	Right-handed alpha
Helix 4	AA4	A	485	503	Right-handed alpha
Helix 5	AA5	A	517	531	Right-handed alpha
Helix 6	AA6	A	542	554	Right-handed alpha
Helix 7	AA7	A	581	589	Right-handed alpha
Helix 8	AA8	A	625	639	Right-handed alpha
Helix 9	AA9	A	656	668	Right-handed alpha
Helix 10	AB1	A	676	682	Right-handed alpha
Helix 11	AB2	A	682	693	Right-handed alpha
Helix 12	AB3	A	701	710	Right-handed alpha
Helix 13	AB4	A	712	717	Right-handed 310
Helix 14	AB5	A	729	740	Right-handed alpha
Helix 15	AB6	A	749	753	Right-handed 310
Helix 16	AB7	A	812	819	Right-handed alpha
Helix 17	AB8	A	865	875	Right-handed alpha
Helix 18	AB9	A	913	921	Right-handed alpha
Helix 19	AC1	A	967	981	Right-handed alpha
Helix 20	AC2	A	998	1013	Right-handed alpha
Helix 21	AC3	A	1018	1025	Right-handed alpha
Helix 22	AC4	A	1027	1032	Right-handed alpha
Helix 23	AC5	A	1057	1071	Right-handed alpha
Helix 24	AC6	A	1073	1075	Right-handed 310
Helix 25	AC7	A	1089	1104	Right-handed alpha
Helix 26	AC8	A	1105	1107	Right-handed 310
Helix 27	AC9	A	1138	1150	Right-handed alpha
Helix 28	AD1	A	1189	1206	Right-handed alpha
Helix 29	AD2	A	1218	1231	Right-handed alpha
Helix 30	AD3	A	1232	1234	Right-handed 310
Helix 31	AD4	A	1238	1251	Right-handed alpha
Helix 32	AD5	A	1282	1296	Right-handed alpha
Helix 33	AD6	A	1299	1315	Right-handed alpha
Helix 34	AD7	A	1357	1374	Right-handed alpha
Helix 35	AD8	A	1379	1388	Right-handed alpha
Helix 36	AD9	A	1463	1484	Right-handed alpha
Helix 37	AE1	A	1488	1492	Right-handed 310
Helix 38	AE2	A	1496	1511	Right-handed alpha
Helix 39	AE3	B	48	59	Right-handed alpha

There are 12 sheets in PDB entry 5U89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	484	first strand
Strand 2	A	474	478	anti-parallel
Strand 3	A	671	674	parallel
Strand 4	A	646	649	parallel
Strand 5	A	697	700	parallel
Strand 6	A	720	724	parallel
Strand 7	A	741	747	parallel
Strand 8	A	757	760	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	536	first strand
Strand 2	A	509	513	parallel
Strand 3	A	557	560	parallel
Strand 4	A	575	578	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	611	first strand
Strand 2	A	619	624	anti-parallel
Strand 3	A	808	809	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	783	first strand
Strand 2	A	795	802	anti-parallel
Strand 3	A	831	841	anti-parallel
Strand 4	A	820	822	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	783	first strand
Strand 2	A	795	802	anti-parallel
Strand 3	A	831	841	anti-parallel
Strand 4	A	847	852	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	859	first strand
Strand 2	A	862	864	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	890	first strand
Strand 2	A	893	902	anti-parallel
Strand 3	A	931	934	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1132	1136	first strand
Strand 2	A	1162	1168	parallel
Strand 3	A	1173	1181	anti-parallel
Strand 4	A	1077	1085	anti-parallel
Strand 5	A	1419	1424	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1109	1110	first strand
Strand 2	A	1121	1122	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1274	1281	first strand
Strand 2	A	1448	1458	anti-parallel
Strand 3	A	1434	1442	anti-parallel
Strand 4	A	1401	1406	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1320	1327	first strand
Strand 2	A	1344	1351	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	30	first strand
Strand 2	B	15	20	anti-parallel
Strand 3	B	40	47	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U89

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U89