Analysis of interatomic Contacts of Structural Units in PDB entry:
5U8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U8J entry

There are 4 chains in PDB entry 5U8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 171
B
 MET 1THR 173
C
 LYS 2ASP 172
D
 MET 1VAL 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5U8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 23Right-handed alpha
Helix 2
AA2
A
24 27Right-handed 310
Helix 3
AA3
A
31 39Right-handed alpha
Helix 4
AA4
A
51 65Right-handed alpha
Helix 5
AA5
A
96 110Right-handed alpha
Helix 6
AA6
A
113 121Right-handed alpha
Helix 7
AA7
A
129 143Right-handed alpha
Helix 8
AA8
B
6 23Right-handed alpha
Helix 9
AA9
B
24 27Right-handed 310
Helix 10
AB1
B
31 39Right-handed alpha
Helix 11
AB2
B
51 65Right-handed alpha
Helix 12
AB3
B
96 110Right-handed alpha
Helix 13
AB4
B
113 121Right-handed alpha
Helix 14
AB5
B
129 143Right-handed alpha
Helix 15
AB6
C
6 23Right-handed alpha
Helix 16
AB7
C
24 27Right-handed 310
Helix 17
AB8
C
30 39Right-handed alpha
Helix 18
AB9
C
51 65Right-handed alpha
Helix 19
AC1
C
74 78Right-handed 310
Helix 20
AC2
C
96 110Right-handed alpha
Helix 21
AC3
C
113 121Right-handed alpha
Helix 22
AC4
C
122 124Right-handed 310
Helix 23
AC5
C
129 143Right-handed alpha
Helix 24
AC6
D
6 23Right-handed alpha
Helix 25
AC7
D
24 27Right-handed 310
Helix 26
AC8
D
31 39Right-handed alpha
Helix 27
AC9
D
51 65Right-handed alpha
Helix 28
AD1
D
96 110Right-handed alpha
Helix 29
AD2
D
113 122Right-handed alpha
Helix 30
AD3
D
129 143Right-handed alpha
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There are 8 sheets in PDB entry 5U8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
80 83anti-parallel
Strand 3
A
68 71anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
163 165anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
80 83anti-parallel
Strand 3
B
68 71anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
163 165anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 71first strand
Strand 2
C
80 83anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 151first strand
Strand 2
C
163 165anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 30first strand
Strand 2
D
80 83anti-parallel
Strand 3
D
68 71anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
149 151first strand
Strand 2
D
163 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il