Analysis of interatomic Contacts of Structural Units in PDB entry:
5U8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U8O entry

There are 4 chains in PDB entry 5U8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -2	ALA 358
B	HIS -3	ARG 359
C	HIS -2	ALA 358
D	HIS -1	VAL 236

There are 56 helices in PDB entry 5U8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	8	Right-handed 310
Helix 2	AA2	A	67	81	Right-handed alpha
Helix 3	AA3	A	96	101	Right-handed alpha
Helix 4	AA4	A	102	108	Right-handed alpha
Helix 5	AA5	A	109	113	Right-handed 310
Helix 6	AA6	A	123	135	Right-handed alpha
Helix 7	AA7	A	143	152	Right-handed alpha
Helix 8	AA8	A	156	165	Right-handed alpha
Helix 9	AA9	A	170	174	Right-handed alpha
Helix 10	AB1	A	244	253	Right-handed alpha
Helix 11	AB2	A	253	258	Right-handed alpha
Helix 12	AB3	A	275	301	Right-handed alpha
Helix 13	AB4	A	304	313	Right-handed alpha
Helix 14	AB5	A	319	340	Right-handed alpha
Helix 15	AB6	B	4	8	Right-handed 310
Helix 16	AB7	B	67	81	Right-handed alpha
Helix 17	AB8	B	96	101	Right-handed alpha
Helix 18	AB9	B	102	108	Right-handed alpha
Helix 19	AC1	B	109	113	Right-handed 310
Helix 20	AC2	B	123	134	Right-handed alpha
Helix 21	AC3	B	142	152	Right-handed alpha
Helix 22	AC4	B	156	166	Right-handed alpha
Helix 23	AC5	B	168	174	Right-handed alpha
Helix 24	AC6	B	244	253	Right-handed alpha
Helix 25	AC7	B	253	258	Right-handed alpha
Helix 26	AC8	B	275	301	Right-handed alpha
Helix 27	AC9	B	304	313	Right-handed alpha
Helix 28	AD1	B	319	340	Right-handed alpha
Helix 29	AD2	C	4	8	Right-handed 310
Helix 30	AD3	C	67	81	Right-handed alpha
Helix 31	AD4	C	96	101	Right-handed alpha
Helix 32	AD5	C	102	108	Right-handed alpha
Helix 33	AD6	C	109	113	Right-handed 310
Helix 34	AD7	C	123	134	Right-handed alpha
Helix 35	AD8	C	143	152	Right-handed alpha
Helix 36	AD9	C	156	166	Right-handed alpha
Helix 37	AE1	C	168	174	Right-handed alpha
Helix 38	AE2	C	244	253	Right-handed alpha
Helix 39	AE3	C	253	258	Right-handed alpha
Helix 40	AE4	C	275	301	Right-handed alpha
Helix 41	AE5	C	304	313	Right-handed alpha
Helix 42	AE6	C	322	340	Right-handed alpha
Helix 43	AE7	D	4	8	Right-handed 310
Helix 44	AE8	D	67	81	Right-handed alpha
Helix 45	AE9	D	96	101	Right-handed alpha
Helix 46	AF1	D	102	108	Right-handed alpha
Helix 47	AF2	D	109	113	Right-handed 310
Helix 48	AF3	D	123	134	Right-handed alpha
Helix 49	AF4	D	142	151	Right-handed alpha
Helix 50	AF5	D	156	166	Right-handed alpha
Helix 51	AF6	D	168	174	Right-handed alpha
Helix 52	AF7	D	244	253	Right-handed alpha
Helix 53	AF8	D	253	258	Right-handed alpha
Helix 54	AF9	D	275	301	Right-handed alpha
Helix 55	AG1	D	304	313	Right-handed alpha
Helix 56	AG2	D	319	340	Right-handed alpha

There are 12 sheets in PDB entry 5U8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	29	35	anti-parallel
Strand 3	A	42	52	anti-parallel
Strand 4	A	55	61	anti-parallel
Strand 5	A	87	91	parallel
Strand 6	A	119	122	parallel
Strand 7	A	182	184	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	A	195	202	anti-parallel
Strand 3	A	209	214	anti-parallel
Strand 4	A	219	223	anti-parallel
Strand 5	A	264	267	parallel
Strand 6	A	273	274	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	347	first strand
Strand 2	A	353	357	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	29	35	anti-parallel
Strand 3	B	42	52	anti-parallel
Strand 4	B	55	61	anti-parallel
Strand 5	B	87	91	parallel
Strand 6	B	118	122	parallel
Strand 7	B	182	184	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	195	202	anti-parallel
Strand 3	B	209	214	anti-parallel
Strand 4	B	219	223	anti-parallel
Strand 5	B	264	267	parallel
Strand 6	B	273	274	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	347	first strand
Strand 2	B	353	357	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	29	35	anti-parallel
Strand 3	C	42	52	anti-parallel
Strand 4	C	55	61	anti-parallel
Strand 5	C	87	91	parallel
Strand 6	C	118	122	parallel
Strand 7	C	182	184	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	192	first strand
Strand 2	C	195	202	anti-parallel
Strand 3	C	209	214	anti-parallel
Strand 4	C	219	223	anti-parallel
Strand 5	C	264	267	parallel
Strand 6	C	273	274	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	347	first strand
Strand 2	C	353	357	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	26	first strand
Strand 2	D	29	35	anti-parallel
Strand 3	D	42	52	anti-parallel
Strand 4	D	55	61	anti-parallel
Strand 5	D	87	91	parallel
Strand 6	D	118	122	parallel
Strand 7	D	182	184	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	192	first strand
Strand 2	D	195	202	anti-parallel
Strand 3	D	209	214	anti-parallel
Strand 4	D	219	223	anti-parallel
Strand 5	D	264	267	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	347	first strand
Strand 2	D	353	357	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U8O