Analysis of interatomic Contacts of Structural Units in PDB entry:
5U8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U8P entry

There are 2 chains in PDB entry 5U8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 37PHE 328
B
 GLY 37PHE 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5U8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 64Right-handed 310
Helix 2
AA2
A
93 106Right-handed alpha
Helix 3
AA3
A
115 117Right-handed 310
Helix 4
AA4
A
118 132Right-handed alpha
Helix 5
AA5
A
145 161Right-handed alpha
Helix 6
AA6
A
178 182Right-handed 310
Helix 7
AA7
A
183 195Right-handed alpha
Helix 8
AA8
A
195 206Right-handed alpha
Helix 9
AA9
A
207 209Right-handed 310
Helix 10
AB1
A
221 226Right-handed alpha
Helix 11
AB2
A
230 252Right-handed alpha
Helix 12
AB3
A
253 255Right-handed 310
Helix 13
AB4
A
268 273Right-handed alpha
Helix 14
AB5
A
277 283Right-handed alpha
Helix 15
AB6
A
295 298Right-handed 310
Helix 16
AB7
A
299 308Right-handed alpha
Helix 17
AB8
B
60 64Right-handed 310
Helix 18
AB9
B
93 106Right-handed alpha
Helix 19
AC1
B
115 117Right-handed 310
Helix 20
AC2
B
118 132Right-handed alpha
Helix 21
AC3
B
145 161Right-handed alpha
Helix 22
AC4
B
178 182Right-handed 310
Helix 23
AC5
B
183 195Right-handed alpha
Helix 24
AC6
B
195 206Right-handed alpha
Helix 25
AC7
B
207 209Right-handed 310
Helix 26
AC8
B
221 226Right-handed alpha
Helix 27
AC9
B
230 252Right-handed alpha
Helix 28
AD1
B
253 255Right-handed 310
Helix 29
AD2
B
268 273Right-handed alpha
Helix 30
AD3
B
277 283Right-handed alpha
Helix 31
AD4
B
295 298Right-handed 310
Helix 32
AD5
B
299 308Right-handed alpha
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There are 2 sheets in PDB entry 5U8P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
109 114parallel
Strand 3
A
85 88parallel
Strand 4
A
165 168parallel
Strand 5
A
214 218parallel
Strand 6
A
257 263parallel
Strand 7
A
318 321parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 140first strand
Strand 2
B
109 114parallel
Strand 3
B
85 88parallel
Strand 4
B
165 168parallel
Strand 5
B
214 218parallel
Strand 6
B
257 263parallel
Strand 7
B
318 321parallel
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