Analysis of interatomic Contacts of Structural Units in PDB entry:
5U8U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U8U entry

There are 2 chains in PDB entry 5U8U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	ASN 474
B	MET 1	LEU 217

There are 61 helices in PDB entry 5U8U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	26	Right-handed alpha
Helix 2	AA2	A	46	53	Right-handed alpha
Helix 3	AA3	A	53	73	Right-handed alpha
Helix 4	AA4	A	74	77	Right-handed 310
Helix 5	AA5	A	87	114	Right-handed alpha
Helix 6	AA6	A	170	175	Right-handed alpha
Helix 7	AA7	A	190	203	Right-handed alpha
Helix 8	AA8	A	221	235	Right-handed alpha
Helix 9	AA9	A	318	321	Right-handed 310
Helix 10	AB1	A	326	342	Right-handed alpha
Helix 11	AB2	A	369	376	Right-handed alpha
Helix 12	AB3	A	390	396	Right-handed alpha
Helix 13	AB4	A	423	437	Right-handed alpha
Helix 14	AB5	A	440	446	Right-handed alpha
Helix 15	AB6	A	455	466	Right-handed alpha
Helix 16	AB7	B	13	26	Right-handed alpha
Helix 17	AB8	B	46	53	Right-handed alpha
Helix 18	AB9	B	53	73	Right-handed alpha
Helix 19	AC1	B	74	77	Right-handed 310
Helix 20	AC2	B	87	114	Right-handed alpha
Helix 21	AC3	B	170	175	Right-handed alpha
Helix 22	AC4	B	190	203	Right-handed alpha
Helix 23	AC5	B	221	235	Right-handed alpha
Helix 24	AC6	B	318	321	Right-handed 310
Helix 25	AC7	B	326	342	Right-handed alpha
Helix 26	AC8	B	369	376	Right-handed alpha
Helix 27	AC9	B	390	396	Right-handed alpha
Helix 28	AD1	B	423	437	Right-handed alpha
Helix 29	AD2	B	440	446	Right-handed alpha
Helix 30	AD3	B	455	466	Right-handed alpha
Helix 31	AD4	C	13	26	Right-handed alpha
Helix 32	AD5	C	46	53	Right-handed alpha
Helix 33	AD6	C	53	73	Right-handed alpha
Helix 34	AD7	C	74	77	Right-handed 310
Helix 35	AD8	C	87	114	Right-handed alpha
Helix 36	AD9	C	170	175	Right-handed alpha
Helix 37	AE1	C	190	203	Right-handed alpha
Helix 38	AE2	C	221	235	Right-handed alpha
Helix 39	AE3	C	318	321	Right-handed 310
Helix 40	AE4	C	326	342	Right-handed alpha
Helix 41	AE5	C	349	353	Right-handed 310
Helix 42	AE6	C	369	376	Right-handed alpha
Helix 43	AE7	C	390	396	Right-handed alpha
Helix 44	AE8	C	423	437	Right-handed alpha
Helix 45	AE9	C	440	446	Right-handed alpha
Helix 46	AF1	C	455	466	Right-handed alpha
Helix 47	AF2	D	13	26	Right-handed alpha
Helix 48	AF3	D	46	53	Right-handed alpha
Helix 49	AF4	D	53	73	Right-handed alpha
Helix 50	AF5	D	74	77	Right-handed 310
Helix 51	AF6	D	87	114	Right-handed alpha
Helix 52	AF7	D	170	175	Right-handed alpha
Helix 53	AF8	D	190	203	Right-handed alpha
Helix 54	AF9	D	221	235	Right-handed alpha
Helix 55	AG1	D	318	321	Right-handed 310
Helix 56	AG2	D	326	342	Right-handed alpha
Helix 57	AG3	D	369	377	Right-handed alpha
Helix 58	AG4	D	390	396	Right-handed alpha
Helix 59	AG5	D	423	437	Right-handed alpha
Helix 60	AG6	D	440	447	Right-handed alpha
Helix 61	AG7	D	455	466	Right-handed alpha

There are 26 sheets in PDB entry 5U8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	30	34	parallel
Strand 3	A	4	10	parallel
Strand 4	A	139	149	parallel
Strand 5	A	129	133	anti-parallel
Strand 6	A	121	124	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	30	34	parallel
Strand 3	A	4	10	parallel
Strand 4	A	139	149	parallel
Strand 5	A	314	316	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	B	85	86	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	B	79	82	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	279	281	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	272	275	parallel
Strand 3	A	183	187	parallel
Strand 4	A	206	210	parallel
Strand 5	A	237	240	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	251	first strand
Strand 2	A	254	261	anti-parallel
Strand 3	A	264	270	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	357	first strand
Strand 2	A	363	367	anti-parallel
Strand 3	A	414	420	anti-parallel
Strand 4	A	402	408	anti-parallel
Strand 5	A	380	386	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	316	first strand
Strand 2	B	139	149	parallel
Strand 3	B	129	134	anti-parallel
Strand 4	B	116	124	anti-parallel
Strand 5	B	30	34	parallel
Strand 6	B	4	10	parallel
Strand 7	B	139	149	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	279	281	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	169	first strand
Strand 2	B	272	275	parallel
Strand 3	B	183	187	parallel
Strand 4	B	206	211	parallel
Strand 5	B	237	241	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	251	first strand
Strand 2	B	254	261	anti-parallel
Strand 3	B	264	270	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	357	first strand
Strand 2	B	363	367	anti-parallel
Strand 3	B	414	420	anti-parallel
Strand 4	B	402	408	anti-parallel
Strand 5	B	380	386	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	30	34	parallel
Strand 3	C	4	10	parallel
Strand 4	C	139	149	parallel
Strand 5	C	129	133	anti-parallel
Strand 6	C	121	124	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	30	34	parallel
Strand 3	C	4	10	parallel
Strand 4	C	139	149	parallel
Strand 5	C	314	316	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	D	85	86	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	D	79	82	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	279	281	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	272	275	parallel
Strand 3	C	183	187	parallel
Strand 4	C	206	210	parallel
Strand 5	C	237	240	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	251	first strand
Strand 2	C	254	261	anti-parallel
Strand 3	C	264	270	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	357	first strand
Strand 2	C	363	367	anti-parallel
Strand 3	C	414	420	anti-parallel
Strand 4	C	402	408	anti-parallel
Strand 5	C	380	386	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	316	first strand
Strand 2	D	139	149	parallel
Strand 3	D	129	134	anti-parallel
Strand 4	D	116	124	anti-parallel
Strand 5	D	30	34	parallel
Strand 6	D	3	10	parallel
Strand 7	D	139	149	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	155	first strand
Strand 2	D	279	281	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	169	first strand
Strand 2	D	272	275	parallel
Strand 3	D	183	187	parallel
Strand 4	D	206	211	parallel
Strand 5	D	238	241	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	251	first strand
Strand 2	D	254	261	anti-parallel
Strand 3	D	264	270	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	357	first strand
Strand 2	D	363	367	anti-parallel
Strand 3	D	414	420	anti-parallel
Strand 4	D	402	408	anti-parallel
Strand 5	D	380	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U8U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U8U