Analysis of interatomic Contacts of Structural Units in PDB entry:
5U95

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U95 entry

There are 3 chains in PDB entry 5U95 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 8	LYS 437
B	ASP 9	ALA 538
C	ASP 9	CYS 360

There are 88 helices in PDB entry 5U95. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	32	Right-handed alpha
Helix 2	AA2	A	34	39	Right-handed alpha
Helix 3	AA3	A	55	72	Right-handed alpha
Helix 4	AA4	A	87	100	Right-handed alpha
Helix 5	AA5	A	112	123	Right-handed alpha
Helix 6	AA6	A	131	137	Right-handed 310
Helix 7	AA7	A	138	145	Right-handed alpha
Helix 8	AA8	A	162	167	Right-handed alpha
Helix 9	AA9	A	169	173	Right-handed 310
Helix 10	AB1	A	203	215	Right-handed alpha
Helix 11	AB2	A	237	244	Right-handed alpha
Helix 12	AB3	A	244	252	Right-handed alpha
Helix 13	AB4	A	262	274	Right-handed alpha
Helix 14	AB5	A	281	291	Right-handed alpha
Helix 15	AB6	A	292	297	Right-handed 310
Helix 16	AB7	A	313	324	Right-handed alpha
Helix 17	AB8	A	336	339	Right-handed 310
Helix 18	AB9	A	345	349	Right-handed 310
Helix 19	AC1	A	402	408	Right-handed alpha
Helix 20	AC2	B	26	32	Right-handed alpha
Helix 21	AC3	B	34	38	Right-handed 310
Helix 22	AC4	B	55	72	Right-handed alpha
Helix 23	AC5	B	87	100	Right-handed alpha
Helix 24	AC6	B	112	124	Right-handed alpha
Helix 25	AC7	B	131	137	Right-handed 310
Helix 26	AC8	B	138	143	Right-handed alpha
Helix 27	AC9	B	162	167	Right-handed alpha
Helix 28	AD1	B	169	173	Right-handed 310
Helix 29	AD2	B	203	215	Right-handed alpha
Helix 30	AD3	B	237	244	Right-handed alpha
Helix 31	AD4	B	244	252	Right-handed alpha
Helix 32	AD5	B	262	274	Right-handed alpha
Helix 33	AD6	B	281	291	Right-handed alpha
Helix 34	AD7	B	293	297	Right-handed 310
Helix 35	AD8	B	313	324	Right-handed alpha
Helix 36	AD9	B	336	339	Right-handed 310
Helix 37	AE1	B	345	349	Right-handed 310
Helix 38	AE2	B	402	410	Right-handed alpha
Helix 39	AE3	B	448	458	Right-handed alpha
Helix 40	AE4	B	492	502	Right-handed alpha
Helix 41	AE5	B	503	504	Right-handed 310
Helix 42	AE6	B	505	509	Right-handed 310
Helix 43	AE7	B	528	535	Right-handed alpha
Helix 44	AE8	C	26	32	Right-handed alpha
Helix 45	AE9	C	34	38	Right-handed 310
Helix 46	AF1	C	55	72	Right-handed alpha
Helix 47	AF2	C	87	100	Right-handed alpha
Helix 48	AF3	C	112	124	Right-handed alpha
Helix 49	AF4	C	131	137	Right-handed 310
Helix 50	AF5	C	138	144	Right-handed alpha
Helix 51	AF6	C	162	167	Right-handed alpha
Helix 52	AF7	C	169	173	Right-handed 310
Helix 53	AF8	C	203	215	Right-handed alpha
Helix 54	AF9	C	237	244	Right-handed alpha
Helix 55	AG1	C	244	252	Right-handed alpha
Helix 56	AG2	C	262	274	Right-handed alpha
Helix 57	AG3	C	281	291	Right-handed alpha
Helix 58	AG4	C	293	297	Right-handed 310
Helix 59	AG5	C	313	324	Right-handed alpha
Helix 60	AG6	C	336	339	Right-handed 310
Helix 61	AG7	C	345	349	Right-handed 310
Helix 62	AG8	C	402	408	Right-handed alpha
Helix 63	AG9	C	448	458	Right-handed alpha
Helix 64	AH1	C	492	502	Right-handed alpha
Helix 65	AH2	C	505	509	Right-handed 310
Helix 66	AH3	C	528	535	Right-handed alpha
Helix 67	AH4	D	26	32	Right-handed alpha
Helix 68	AH5	D	34	38	Right-handed 310
Helix 69	AH6	D	55	72	Right-handed alpha
Helix 70	AH7	D	87	100	Right-handed alpha
Helix 71	AH8	D	112	124	Right-handed alpha
Helix 72	AH9	D	131	137	Right-handed 310
Helix 73	AI1	D	138	145	Right-handed alpha
Helix 74	AI2	D	162	167	Right-handed alpha
Helix 75	AI3	D	169	173	Right-handed 310
Helix 76	AI4	D	203	215	Right-handed alpha
Helix 77	AI5	D	237	244	Right-handed alpha
Helix 78	AI6	D	244	252	Right-handed alpha
Helix 79	AI7	D	262	274	Right-handed alpha
Helix 80	AI8	D	281	291	Right-handed alpha
Helix 81	AI9	D	292	297	Right-handed 310
Helix 82	AJ1	D	313	324	Right-handed alpha
Helix 83	AJ2	D	336	339	Right-handed 310
Helix 84	AJ3	D	345	349	Right-handed 310
Helix 85	AJ4	D	402	410	Right-handed alpha
Helix 86	AJ5	D	448	458	Right-handed alpha
Helix 87	AJ6	D	492	502	Right-handed alpha
Helix 88	AJ7	D	505	509	Right-handed 310

There are 32 sheets in PDB entry 5U95. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	42	46	anti-parallel
Strand 3	A	254	257	parallel
Strand 4	A	228	231	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	79	82	parallel
Strand 3	A	125	130	parallel
Strand 4	A	148	151	parallel
Strand 5	A	160	161	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	199	202	anti-parallel
Strand 3	A	398	399	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	304	307	parallel
Strand 3	A	328	330	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	341	344	anti-parallel
Strand 3	A	362	363	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	372	first strand
Strand 2	A	386	391	anti-parallel
Strand 3	A	416	424	anti-parallel
Strand 4	A	430	434	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	42	46	anti-parallel
Strand 3	B	254	257	parallel
Strand 4	B	228	231	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	79	82	parallel
Strand 3	B	125	130	parallel
Strand 4	B	148	151	parallel
Strand 5	B	160	161	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	188	189	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	398	399	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	304	307	parallel
Strand 3	B	328	331	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	341	344	anti-parallel
Strand 3	B	362	363	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	372	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	416	424	anti-parallel
Strand 4	B	430	434	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	441	first strand
Strand 2	B	446	447	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	470	first strand
Strand 2	B	478	485	anti-parallel
Strand 3	B	513	515	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	42	46	anti-parallel
Strand 3	C	254	257	parallel
Strand 4	C	228	231	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	79	82	parallel
Strand 3	C	125	130	parallel
Strand 4	C	148	151	parallel
Strand 5	C	160	161	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	188	189	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	398	399	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	280	first strand
Strand 2	C	304	307	parallel
Strand 3	C	328	331	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	341	344	anti-parallel
Strand 3	C	362	363	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	372	first strand
Strand 2	C	386	391	anti-parallel
Strand 3	C	416	424	anti-parallel
Strand 4	C	430	434	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	441	first strand
Strand 2	C	446	447	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	465	470	first strand
Strand 2	C	478	483	anti-parallel
Strand 3	C	512	515	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	54	first strand
Strand 2	D	42	46	anti-parallel
Strand 3	D	254	257	parallel
Strand 4	D	228	231	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	106	first strand
Strand 2	D	79	82	parallel
Strand 3	D	127	130	parallel
Strand 4	D	148	151	parallel
Strand 5	D	160	161	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	185	first strand
Strand 2	D	197	202	anti-parallel
Strand 3	D	188	189	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	185	first strand
Strand 2	D	197	202	anti-parallel
Strand 3	D	398	399	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	280	first strand
Strand 2	D	304	307	parallel
Strand 3	D	328	330	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	341	344	anti-parallel
Strand 3	D	362	363	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	372	first strand
Strand 2	D	386	391	anti-parallel
Strand 3	D	416	424	anti-parallel
Strand 4	D	430	434	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	465	468	first strand
Strand 2	D	480	483	anti-parallel
Strand 3	D	512	515	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U95

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U95