Analysis of interatomic Contacts of Structural Units in PDB entry:
5U9C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U9C entry

There are 5 chains in PDB entry 5U9C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	LEU 288
B	LYS 2	LEU 288
C	LYS 2	VAL 289
D	SER -2	LEU 288
E	SER -2	TYR 79

There are 94 helices in PDB entry 5U9C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	23	25	Right-handed 310
Helix 3	AA3	A	41	43	Right-handed 310
Helix 4	AA4	A	44	53	Right-handed alpha
Helix 5	AA5	A	65	72	Right-handed alpha
Helix 6	AA6	A	72	81	Right-handed alpha
Helix 7	AA7	A	81	95	Right-handed alpha
Helix 8	AA8	A	105	107	Right-handed 310
Helix 9	AA9	A	125	142	Right-handed alpha
Helix 10	AB1	A	157	162	Right-handed alpha
Helix 11	AB2	A	164	175	Right-handed alpha
Helix 12	AB3	A	193	207	Right-handed alpha
Helix 13	AB4	A	222	233	Right-handed alpha
Helix 14	AB5	A	243	247	Right-handed 310
Helix 15	AB6	A	263	267	Right-handed 310
Helix 16	AB7	A	275	285	Right-handed alpha
Helix 17	AB8	A	286	288	Right-handed 310
Helix 18	AB9	B	12	22	Right-handed alpha
Helix 19	AC1	B	23	25	Right-handed 310
Helix 20	AC2	B	41	43	Right-handed 310
Helix 21	AC3	B	44	53	Right-handed alpha
Helix 22	AC4	B	65	72	Right-handed alpha
Helix 23	AC5	B	72	81	Right-handed alpha
Helix 24	AC6	B	81	95	Right-handed alpha
Helix 25	AC7	B	105	107	Right-handed 310
Helix 26	AC8	B	125	142	Right-handed alpha
Helix 27	AC9	B	157	162	Right-handed alpha
Helix 28	AD1	B	164	175	Right-handed alpha
Helix 29	AD2	B	193	207	Right-handed alpha
Helix 30	AD3	B	222	233	Right-handed alpha
Helix 31	AD4	B	243	247	Right-handed 310
Helix 32	AD5	B	263	267	Right-handed 310
Helix 33	AD6	B	275	286	Right-handed alpha
Helix 34	AD7	C	12	22	Right-handed alpha
Helix 35	AD8	C	23	25	Right-handed 310
Helix 36	AD9	C	41	43	Right-handed 310
Helix 37	AE1	C	44	53	Right-handed alpha
Helix 38	AE2	C	65	72	Right-handed alpha
Helix 39	AE3	C	72	81	Right-handed alpha
Helix 40	AE4	C	81	95	Right-handed alpha
Helix 41	AE5	C	105	107	Right-handed 310
Helix 42	AE6	C	125	142	Right-handed alpha
Helix 43	AE7	C	157	162	Right-handed alpha
Helix 44	AE8	C	164	175	Right-handed alpha
Helix 45	AE9	C	193	207	Right-handed alpha
Helix 46	AF1	C	222	233	Right-handed alpha
Helix 47	AF2	C	243	247	Right-handed 310
Helix 48	AF3	C	263	267	Right-handed 310
Helix 49	AF4	C	275	286	Right-handed alpha
Helix 50	AF5	D	12	23	Right-handed alpha
Helix 51	AF6	D	41	43	Right-handed 310
Helix 52	AF7	D	44	53	Right-handed alpha
Helix 53	AF8	D	65	72	Right-handed alpha
Helix 54	AF9	D	72	81	Right-handed alpha
Helix 55	AG1	D	81	95	Right-handed alpha
Helix 56	AG2	D	105	107	Right-handed 310
Helix 57	AG3	D	125	142	Right-handed alpha
Helix 58	AG4	D	157	162	Right-handed alpha
Helix 59	AG5	D	164	175	Right-handed alpha
Helix 60	AG6	D	193	207	Right-handed alpha
Helix 61	AG7	D	222	233	Right-handed alpha
Helix 62	AG8	D	243	247	Right-handed 310
Helix 63	AG9	D	263	267	Right-handed 310
Helix 64	AH1	D	275	286	Right-handed alpha
Helix 65	AH2	E	12	23	Right-handed alpha
Helix 66	AH3	E	41	43	Right-handed 310
Helix 67	AH4	E	44	53	Right-handed alpha
Helix 68	AH5	E	65	72	Right-handed alpha
Helix 69	AH6	E	72	81	Right-handed alpha
Helix 70	AH7	E	81	95	Right-handed alpha
Helix 71	AH8	E	105	107	Right-handed 310
Helix 72	AH9	E	125	142	Right-handed alpha
Helix 73	AI1	E	164	175	Right-handed alpha
Helix 74	AI2	E	193	207	Right-handed alpha
Helix 75	AI3	E	222	233	Right-handed alpha
Helix 76	AI4	E	243	247	Right-handed 310
Helix 77	AI5	E	263	267	Right-handed 310
Helix 78	AI6	E	275	288	Right-handed alpha
Helix 79	AI7	F	12	22	Right-handed alpha
Helix 80	AI8	F	23	25	Right-handed 310
Helix 81	AI9	F	41	43	Right-handed 310
Helix 82	AJ1	F	44	53	Right-handed alpha
Helix 83	AJ2	F	65	72	Right-handed alpha
Helix 84	AJ3	F	72	81	Right-handed alpha
Helix 85	AJ4	F	81	95	Right-handed alpha
Helix 86	AJ5	F	105	107	Right-handed 310
Helix 87	AJ6	F	125	142	Right-handed alpha
Helix 88	AJ7	F	157	162	Right-handed alpha
Helix 89	AJ8	F	164	175	Right-handed alpha
Helix 90	AJ9	F	193	207	Right-handed alpha
Helix 91	AK1	F	222	233	Right-handed alpha
Helix 92	AK2	F	243	247	Right-handed 310
Helix 93	AK3	F	263	267	Right-handed 310
Helix 94	AK4	F	275	286	Right-handed alpha

There are 28 sheets in PDB entry 5U9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	4	8	parallel
Strand 3	A	56	59	parallel
Strand 4	A	97	103	parallel
Strand 5	A	146	151	parallel
Strand 6	A	210	214	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	190	192	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	238	242	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	220	221	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	4	8	parallel
Strand 3	B	56	59	parallel
Strand 4	B	97	103	parallel
Strand 5	B	146	151	parallel
Strand 6	B	210	214	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	258	259	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	190	192	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	238	242	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	220	221	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	4	8	parallel
Strand 3	C	56	59	parallel
Strand 4	C	97	103	parallel
Strand 5	C	146	151	parallel
Strand 6	C	210	214	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	190	192	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	183	first strand
Strand 2	C	238	242	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	220	221	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	4	8	parallel
Strand 3	D	56	59	parallel
Strand 4	D	97	103	parallel
Strand 5	D	146	151	parallel
Strand 6	D	210	214	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	115	first strand
Strand 2	D	258	259	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	155	first strand
Strand 2	D	190	192	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	183	first strand
Strand 2	D	238	242	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	220	221	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	31	first strand
Strand 2	E	4	8	parallel
Strand 3	E	56	59	parallel
Strand 4	E	97	103	parallel
Strand 5	E	146	151	parallel
Strand 6	E	210	214	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	115	first strand
Strand 2	E	258	259	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	155	first strand
Strand 2	E	190	192	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	183	first strand
Strand 2	E	238	242	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	188	first strand
Strand 2	E	220	221	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	31	first strand
Strand 2	F	4	8	parallel
Strand 3	F	56	59	parallel
Strand 4	F	97	103	parallel
Strand 5	F	146	151	parallel
Strand 6	F	210	214	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	115	first strand
Strand 2	F	258	259	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	190	192	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	183	first strand
Strand 2	F	238	242	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	188	first strand
Strand 2	F	220	221	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U9C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U9C