Analysis of interatomic Contacts of Structural Units in PDB entry:
5U9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5U9E entry

There are 2 chains in PDB entry 5U9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3THR 165
B
 LEU 5THR 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5U9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
91 94Right-handed 310
Helix 3
AA3
A
99 104Right-handed alpha
Helix 4
AA4
A
119 136Right-handed alpha
Helix 5
AA5
A
143 162Right-handed alpha
Helix 6
AA6
B
8 13Right-handed alpha
Helix 7
AA7
B
91 94Right-handed 310
Helix 8
AA8
B
99 104Right-handed alpha
Helix 9
AA9
B
119 135Right-handed alpha
Helix 10
AB1
B
143 163Right-handed alpha
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There are 4 sheets in PDB entry 5U9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
31 36parallel
Strand 3
A
74 89anti-parallel
Strand 4
A
39 53anti-parallel
Strand 5
A
56 61anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
74 89anti-parallel
Strand 3
A
39 53anti-parallel
Strand 4
A
64 68anti-parallel
Strand 5
A
115 118anti-parallel
Strand 6
A
163 164anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
31 36parallel
Strand 3
B
74 89anti-parallel
Strand 4
B
39 53anti-parallel
Strand 5
B
56 61anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
74 89anti-parallel
Strand 3
B
39 53anti-parallel
Strand 4
B
64 68anti-parallel
Strand 5
B
115 117anti-parallel
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