Analysis of interatomic Contacts of Structural Units in PDB entry:
5U9O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5U9O entry

There are 8 chains in PDB entry 5U9O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 682	GLY 856
B	HIS 684	GLY 856
C	HIS 684	GLY 856
D	LYS 685	GLY 856
E	LYS 685	GLY 856
F	HIS 684	GLY 856
G	ARG 686	GLY 856
H	PRO 687	GLY 856

There are 28 helices in PDB entry 5U9O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	689	709	Right-handed alpha
Helix 2	AA2	A	714	721	Right-handed alpha
Helix 3	AA3	A	722	739	Right-handed alpha
Helix 4	AA4	B	689	708	Right-handed alpha
Helix 5	AA5	B	716	721	Right-handed alpha
Helix 6	AA6	B	722	739	Right-handed alpha
Helix 7	AA7	B	761	763	Right-handed 310
Helix 8	AA8	C	689	708	Right-handed alpha
Helix 9	AA9	C	715	721	Right-handed alpha
Helix 10	AB1	C	722	739	Right-handed alpha
Helix 11	AB2	C	851	855	Right-handed 310
Helix 12	AB3	D	689	709	Right-handed alpha
Helix 13	AB4	D	715	721	Right-handed alpha
Helix 14	AB5	D	722	739	Right-handed alpha
Helix 15	AB6	D	850	854	Right-handed 310
Helix 16	AB7	E	689	709	Right-handed alpha
Helix 17	AB8	E	716	721	Right-handed alpha
Helix 18	AB9	E	722	739	Right-handed alpha
Helix 19	AC1	F	689	709	Right-handed alpha
Helix 20	AC2	F	716	721	Right-handed alpha
Helix 21	AC3	F	722	739	Right-handed alpha
Helix 22	AC4	F	850	854	Right-handed 310
Helix 23	AC5	G	689	709	Right-handed alpha
Helix 24	AC6	G	714	721	Right-handed alpha
Helix 25	AC7	G	723	739	Right-handed alpha
Helix 26	AC8	H	689	708	Right-handed alpha
Helix 27	AC9	H	715	721	Right-handed alpha
Helix 28	AD1	H	722	739	Right-handed alpha

There are 8 sheets in PDB entry 5U9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	756	first strand
Strand 2	A	768	780	anti-parallel
Strand 3	A	788	802	anti-parallel
Strand 4	A	808	816	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	760	first strand
Strand 2	B	764	780	anti-parallel
Strand 3	B	788	802	anti-parallel
Strand 4	B	808	816	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	742	758	first strand
Strand 2	C	766	780	anti-parallel
Strand 3	C	788	802	anti-parallel
Strand 4	C	808	815	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	686	687	first strand
Strand 2	D	742	758	anti-parallel
Strand 3	D	766	780	anti-parallel
Strand 4	D	789	802	anti-parallel
Strand 5	D	808	816	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	742	756	first strand
Strand 2	E	766	780	anti-parallel
Strand 3	E	789	802	anti-parallel
Strand 4	E	808	817	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	686	687	first strand
Strand 2	F	742	757	anti-parallel
Strand 3	F	767	780	anti-parallel
Strand 4	F	789	802	anti-parallel
Strand 5	F	808	815	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	742	758	first strand
Strand 2	G	765	780	anti-parallel
Strand 3	G	788	803	anti-parallel
Strand 4	G	807	815	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	742	758	first strand
Strand 2	H	766	780	anti-parallel
Strand 3	H	790	801	anti-parallel
Strand 4	H	809	815	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5U9O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5U9O