Analysis of interatomic Contacts of Structural Units in PDB entry:
5UAI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UAI entry

There are 4 chains in PDB entry 5UAI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	GLY 313
B	GLN 3	GLY 313
C	GLN 3	GLY 313
D	GLN 3	GLY 313

There are 40 helices in PDB entry 5UAI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	25	Right-handed alpha
Helix 2	AA2	A	50	59	Right-handed alpha
Helix 3	AA3	A	71	80	Right-handed alpha
Helix 4	AA4	A	96	101	Right-handed alpha
Helix 5	AA5	A	122	130	Right-handed alpha
Helix 6	AA6	A	164	189	Right-handed alpha
Helix 7	AA7	A	198	202	Right-handed 310
Helix 8	AA8	A	220	231	Right-handed alpha
Helix 9	AA9	A	295	300	Right-handed alpha
Helix 10	AB1	A	303	307	Right-handed 310
Helix 11	AB2	B	13	24	Right-handed alpha
Helix 12	AB3	B	50	59	Right-handed alpha
Helix 13	AB4	B	71	80	Right-handed alpha
Helix 14	AB5	B	96	101	Right-handed alpha
Helix 15	AB6	B	122	131	Right-handed alpha
Helix 16	AB7	B	164	189	Right-handed alpha
Helix 17	AB8	B	198	202	Right-handed 310
Helix 18	AB9	B	220	231	Right-handed alpha
Helix 19	AC1	B	295	303	Right-handed alpha
Helix 20	AC2	B	304	307	Right-handed 310
Helix 21	AC3	C	13	25	Right-handed alpha
Helix 22	AC4	C	50	59	Right-handed alpha
Helix 23	AC5	C	71	80	Right-handed alpha
Helix 24	AC6	C	96	101	Right-handed alpha
Helix 25	AC7	C	122	131	Right-handed alpha
Helix 26	AC8	C	164	189	Right-handed alpha
Helix 27	AC9	C	198	202	Right-handed 310
Helix 28	AD1	C	220	231	Right-handed alpha
Helix 29	AD2	C	295	303	Right-handed alpha
Helix 30	AD3	C	304	307	Right-handed 310
Helix 31	AD4	D	13	25	Right-handed alpha
Helix 32	AD5	D	50	59	Right-handed alpha
Helix 33	AD6	D	71	80	Right-handed alpha
Helix 34	AD7	D	96	101	Right-handed alpha
Helix 35	AD8	D	122	130	Right-handed alpha
Helix 36	AD9	D	164	189	Right-handed alpha
Helix 37	AE1	D	198	202	Right-handed 310
Helix 38	AE2	D	220	231	Right-handed alpha
Helix 39	AE3	D	295	300	Right-handed alpha
Helix 40	AE4	D	301	307	Right-handed 310

There are 16 sheets in PDB entry 5UAI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	29	34	parallel
Strand 3	A	6	11	parallel
Strand 4	A	85	89	parallel
Strand 5	A	107	111	parallel
Strand 6	A	134	141	anti-parallel
Strand 7	A	151	158	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	47	48	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	244	254	anti-parallel
Strand 3	A	279	286	anti-parallel
Strand 4	A	270	274	anti-parallel
Strand 5	A	263	267	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	244	254	anti-parallel
Strand 3	A	279	286	anti-parallel
Strand 4	A	293	294	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	29	34	parallel
Strand 3	B	6	11	parallel
Strand 4	B	85	89	parallel
Strand 5	B	107	111	parallel
Strand 6	B	134	141	anti-parallel
Strand 7	B	151	158	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	47	48	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	244	254	anti-parallel
Strand 3	B	279	286	anti-parallel
Strand 4	B	270	274	anti-parallel
Strand 5	B	263	267	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	244	254	anti-parallel
Strand 3	B	279	286	anti-parallel
Strand 4	B	293	294	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	29	34	parallel
Strand 3	C	6	11	parallel
Strand 4	C	85	89	parallel
Strand 5	C	107	111	parallel
Strand 6	C	134	141	anti-parallel
Strand 7	C	151	158	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	47	48	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	241	first strand
Strand 2	C	244	254	anti-parallel
Strand 3	C	279	286	anti-parallel
Strand 4	C	270	274	anti-parallel
Strand 5	C	263	267	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	241	first strand
Strand 2	C	244	254	anti-parallel
Strand 3	C	279	286	anti-parallel
Strand 4	C	292	294	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	29	34	parallel
Strand 3	D	6	11	parallel
Strand 4	D	85	89	parallel
Strand 5	D	107	111	parallel
Strand 6	D	134	141	anti-parallel
Strand 7	D	151	158	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	40	first strand
Strand 2	D	47	48	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	241	first strand
Strand 2	D	244	254	anti-parallel
Strand 3	D	279	286	anti-parallel
Strand 4	D	270	274	anti-parallel
Strand 5	D	263	267	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	241	first strand
Strand 2	D	244	254	anti-parallel
Strand 3	D	279	286	anti-parallel
Strand 4	D	292	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UAI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UAI