Analysis of interatomic Contacts of Structural Units in PDB entry:
5UAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UAK entry

There are 2 chains in PDB entry 5UAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5LEU 1436
R
 UNK 1UNK 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 5UAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
19 30Right-handed alpha
Helix 3
AA3
A
45 64Right-handed alpha
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
78 98Right-handed alpha
Helix 6
AA6
A
99 109Right-handed alpha
Helix 7
AA7
A
116 166Right-handed alpha
Helix 8
AA8
A
168 173Right-handed alpha
Helix 9
AA9
A
176 193Right-handed alpha
Helix 10
AB1
A
194 201Right-handed 310
Helix 11
AB2
A
202 215Right-handed alpha
Helix 12
AB3
A
221 268Right-handed alpha
Helix 13
AB4
A
268 276Right-handed alpha
Helix 14
AB5
A
279 323Right-handed alpha
Helix 15
AB6
A
324 329Right-handed 310
Helix 16
AB7
A
333 352Right-handed alpha
Helix 17
AB8
A
352 376Right-handed alpha
Helix 18
AB9
A
463 473Right-handed alpha
Helix 19
AC1
A
501 508Right-handed alpha
Helix 20
AC2
A
513 525Right-handed alpha
Helix 21
AC3
A
526 533Right-handed alpha
Helix 22
AC4
A
549 564Right-handed alpha
Helix 23
AC5
A
579 595Right-handed alpha
Helix 24
AC6
A
606 613Right-handed alpha
Helix 25
AC7
A
629 637Right-handed alpha
Helix 26
AC8
A
637 645Right-handed alpha
Helix 27
AC9
A
845 854Right-handed alpha
Helix 28
AD1
A
857 883Right-handed alpha
Helix 29
AD2
A
916 922Right-handed alpha
Helix 30
AD3
A
922 927Right-handed alpha
Helix 31
AD4
A
935 957Right-handed alpha
Helix 32
AD5
A
960 967Right-handed alpha
Helix 33
AD6
A
968 986Right-handed alpha
Helix 34
AD7
A
986 1012Right-handed alpha
Helix 35
AD8
A
1014 1047Right-handed alpha
Helix 36
AD9
A
1048 1061Right-handed alpha
Helix 37
AE1
A
1061 1069Right-handed alpha
Helix 38
AE2
A
1070 1121Right-handed alpha
Helix 39
AE3
A
1126 1139Right-handed alpha
Helix 40
AE4
A
1139 1169Right-handed alpha
Helix 41
AE5
A
1249 1259Right-handed alpha
Helix 42
AE6
A
1278 1283Right-handed alpha
Helix 43
AE7
A
1299 1305Right-handed alpha
Helix 44
AE8
A
1311 1322Right-handed alpha
Helix 45
AE9
A
1324 1330Right-handed alpha
Helix 46
AF1
A
1339 1343Right-handed 310
Helix 47
AF2
A
1347 1362Right-handed alpha
Helix 48
AF3
A
1371 1376Right-handed alpha
Helix 49
AF4
A
1377 1392Right-handed alpha
Helix 50
AF5
A
1404 1408Right-handed 310
Helix 51
AF6
A
1426 1436Right-handed alpha
Helix 52
AF7
R
5 18Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5UAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 398first strand
Strand 2
A
479 483anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 572parallel
Strand 3
A
600 603parallel
Strand 4
A
453 458parallel
Strand 5
A
615 619parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1225 1234first strand
Strand 2
A
1210 1218anti-parallel
Strand 3
A
1262 1268anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1286 1289first strand
Strand 2
A
1366 1370parallel
Strand 3
A
1396 1400parallel
Strand 4
A
1239 1243parallel
Strand 5
A
1412 1417parallel
Strand 6
A
1420 1424anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il