Analysis of interatomic Contacts of Structural Units in PDB entry:
5UAO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5UAO entry

There are 4 chains in PDB entry 5UAO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 21	GLY 539
B	PRO 26	ARG 541
C	PRO 26	GLY 539
D	PRO 26	GLY 539

There are 83 helices in PDB entry 5UAO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	52	Right-handed alpha
Helix 2	AA2	A	75	84	Right-handed alpha
Helix 3	AA3	A	89	98	Right-handed alpha
Helix 4	AA4	A	128	137	Right-handed alpha
Helix 5	AA5	A	143	152	Right-handed alpha
Helix 6	AA6	A	167	170	Right-handed 310
Helix 7	AA7	A	177	192	Right-handed alpha
Helix 8	AA8	A	232	236	Right-handed 310
Helix 9	AA9	A	305	317	Right-handed alpha
Helix 10	AB1	A	345	347	Right-handed 310
Helix 11	AB2	A	357	373	Right-handed alpha
Helix 12	AB3	A	382	407	Right-handed alpha
Helix 13	AB4	A	413	423	Right-handed alpha
Helix 14	AB5	A	428	438	Right-handed alpha
Helix 15	AB6	A	440	444	Right-handed 310
Helix 16	AB7	A	445	454	Right-handed alpha
Helix 17	AB8	A	460	472	Right-handed alpha
Helix 18	AB9	A	484	502	Right-handed alpha
Helix 19	AC1	A	504	515	Right-handed alpha
Helix 20	AC2	A	516	525	Right-handed alpha
Helix 21	AC3	A	531	539	Right-handed alpha
Helix 22	AC4	B	38	52	Right-handed alpha
Helix 23	AC5	B	76	84	Right-handed alpha
Helix 24	AC6	B	89	98	Right-handed alpha
Helix 25	AC7	B	128	137	Right-handed alpha
Helix 26	AC8	B	143	152	Right-handed alpha
Helix 27	AC9	B	167	170	Right-handed 310
Helix 28	AD1	B	177	192	Right-handed alpha
Helix 29	AD2	B	305	317	Right-handed alpha
Helix 30	AD3	B	357	373	Right-handed alpha
Helix 31	AD4	B	382	407	Right-handed alpha
Helix 32	AD5	B	413	423	Right-handed alpha
Helix 33	AD6	B	425	427	Right-handed 310
Helix 34	AD7	B	428	438	Right-handed alpha
Helix 35	AD8	B	440	444	Right-handed 310
Helix 36	AD9	B	445	454	Right-handed alpha
Helix 37	AE1	B	460	472	Right-handed alpha
Helix 38	AE2	B	484	502	Right-handed alpha
Helix 39	AE3	B	504	515	Right-handed alpha
Helix 40	AE4	B	516	524	Right-handed alpha
Helix 41	AE5	B	531	538	Right-handed alpha
Helix 42	AE6	C	38	52	Right-handed alpha
Helix 43	AE7	C	75	84	Right-handed alpha
Helix 44	AE8	C	89	98	Right-handed alpha
Helix 45	AE9	C	128	137	Right-handed alpha
Helix 46	AF1	C	143	151	Right-handed alpha
Helix 47	AF2	C	167	170	Right-handed 310
Helix 48	AF3	C	177	192	Right-handed alpha
Helix 49	AF4	C	232	236	Right-handed 310
Helix 50	AF5	C	305	317	Right-handed alpha
Helix 51	AF6	C	352	356	Right-handed 310
Helix 52	AF7	C	357	373	Right-handed alpha
Helix 53	AF8	C	382	407	Right-handed alpha
Helix 54	AF9	C	413	423	Right-handed alpha
Helix 55	AG1	C	428	438	Right-handed alpha
Helix 56	AG2	C	440	444	Right-handed 310
Helix 57	AG3	C	445	454	Right-handed alpha
Helix 58	AG4	C	460	472	Right-handed alpha
Helix 59	AG5	C	484	502	Right-handed alpha
Helix 60	AG6	C	504	515	Right-handed alpha
Helix 61	AG7	C	516	525	Right-handed alpha
Helix 62	AG8	C	531	537	Right-handed alpha
Helix 63	AG9	D	38	52	Right-handed alpha
Helix 64	AH1	D	75	84	Right-handed alpha
Helix 65	AH2	D	89	98	Right-handed alpha
Helix 66	AH3	D	128	137	Right-handed alpha
Helix 67	AH4	D	143	152	Right-handed alpha
Helix 68	AH5	D	167	170	Right-handed 310
Helix 69	AH6	D	177	192	Right-handed alpha
Helix 70	AH7	D	232	236	Right-handed 310
Helix 71	AH8	D	305	317	Right-handed alpha
Helix 72	AH9	D	352	356	Right-handed 310
Helix 73	AI1	D	357	373	Right-handed alpha
Helix 74	AI2	D	382	407	Right-handed alpha
Helix 75	AI3	D	413	422	Right-handed alpha
Helix 76	AI4	D	428	438	Right-handed alpha
Helix 77	AI5	D	440	444	Right-handed 310
Helix 78	AI6	D	445	454	Right-handed alpha
Helix 79	AI7	D	460	472	Right-handed alpha
Helix 80	AI8	D	484	502	Right-handed alpha
Helix 81	AI9	D	504	515	Right-handed alpha
Helix 82	AJ1	D	516	525	Right-handed alpha
Helix 83	AJ2	D	531	538	Right-handed alpha

There are 24 sheets in PDB entry 5UAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	198	first strand
Strand 2	A	56	61	parallel
Strand 3	A	31	35	parallel
Strand 4	A	227	230	parallel
Strand 5	A	341	343	parallel
Strand 6	A	337	338	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	173	175	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	104	108	anti-parallel
Strand 3	A	274	279	parallel
Strand 4	A	282	288	anti-parallel
Strand 5	A	293	299	anti-parallel
Strand 6	A	258	264	anti-parallel
Strand 7	A	324	327	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	162	165	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	208	first strand
Strand 2	A	211	217	anti-parallel
Strand 3	A	222	223	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	249	first strand
Strand 2	A	331	333	anti-parallel
Strand 3	A	349	350	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	198	first strand
Strand 2	B	56	61	parallel
Strand 3	B	31	35	parallel
Strand 4	B	227	230	parallel
Strand 5	B	341	343	parallel
Strand 6	B	337	338	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	173	175	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	104	108	anti-parallel
Strand 3	B	274	279	parallel
Strand 4	B	282	288	anti-parallel
Strand 5	B	293	299	anti-parallel
Strand 6	B	258	264	anti-parallel
Strand 7	B	324	327	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	163	165	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	208	first strand
Strand 2	B	211	217	anti-parallel
Strand 3	B	222	223	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	249	first strand
Strand 2	B	331	333	anti-parallel
Strand 3	B	349	350	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	198	first strand
Strand 2	C	56	61	parallel
Strand 3	C	31	35	parallel
Strand 4	C	227	230	parallel
Strand 5	C	341	343	parallel
Strand 6	C	337	338	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	173	175	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	104	108	anti-parallel
Strand 3	C	274	279	parallel
Strand 4	C	282	288	anti-parallel
Strand 5	C	293	299	anti-parallel
Strand 6	C	258	264	anti-parallel
Strand 7	C	324	327	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	C	162	165	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	208	first strand
Strand 2	C	211	217	anti-parallel
Strand 3	C	222	223	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	331	333	anti-parallel
Strand 3	C	349	350	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	198	first strand
Strand 2	D	56	61	parallel
Strand 3	D	31	35	parallel
Strand 4	D	227	230	parallel
Strand 5	D	341	343	parallel
Strand 6	D	337	338	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	173	175	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	119	first strand
Strand 2	D	104	108	anti-parallel
Strand 3	D	274	279	parallel
Strand 4	D	282	288	anti-parallel
Strand 5	D	293	299	anti-parallel
Strand 6	D	258	264	anti-parallel
Strand 7	D	324	327	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	163	165	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	208	first strand
Strand 2	D	211	217	anti-parallel
Strand 3	D	222	223	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	249	first strand
Strand 2	D	331	333	anti-parallel
Strand 3	D	349	350	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5UAO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5UAO