Analysis of interatomic Contacts of Structural Units in PDB entry:
5UAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5UAR entry

There is 1 chain in PDB entry 5UAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 1437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5UAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
10 17Right-handed alpha
Helix 3
AA3
A
20 30Right-handed alpha
Helix 4
AA4
A
45 63Right-handed alpha
Helix 5
AA5
A
69 76Right-handed alpha
Helix 6
AA6
A
78 95Right-handed alpha
Helix 7
AA7
A
98 110Right-handed alpha
Helix 8
AA8
A
117 166Right-handed alpha
Helix 9
AA9
A
169 174Right-handed alpha
Helix 10
AB1
A
177 196Right-handed alpha
Helix 11
AB2
A
197 199Right-handed 310
Helix 12
AB3
A
200 216Right-handed alpha
Helix 13
AB4
A
223 269Right-handed alpha
Helix 14
AB5
A
269 277Right-handed alpha
Helix 15
AB6
A
280 328Right-handed alpha
Helix 16
AB7
A
333 353Right-handed alpha
Helix 17
AB8
A
354 377Right-handed alpha
Helix 18
AB9
A
464 472Right-handed alpha
Helix 19
AC1
A
501 507Right-handed alpha
Helix 20
AC2
A
513 523Right-handed alpha
Helix 21
AC3
A
525 532Right-handed alpha
Helix 22
AC4
A
534 537Right-handed 310
Helix 23
AC5
A
548 563Right-handed alpha
Helix 24
AC6
A
578 593Right-handed alpha
Helix 25
AC7
A
594 597Right-handed 310
Helix 26
AC8
A
605 612Right-handed alpha
Helix 27
AC9
A
628 634Right-handed alpha
Helix 28
AD1
A
636 645Right-handed alpha
Helix 29
AD2
A
653 669Right-handed alpha
Helix 30
AD3
A
844 853Right-handed alpha
Helix 31
AD4
A
855 882Right-handed alpha
Helix 32
AD5
A
882 891Right-handed alpha
Helix 33
AD6
A
921 930Right-handed alpha
Helix 34
AD7
A
930 935Right-handed alpha
Helix 35
AD8
A
938 943Right-handed alpha
Helix 36
AD9
A
943 966Right-handed alpha
Helix 37
AE1
A
979 986Right-handed alpha
Helix 38
AE2
A
986 993Right-handed alpha
Helix 39
AE3
A
993 1020Right-handed alpha
Helix 40
AE4
A
1022 1069Right-handed alpha
Helix 41
AE5
A
1069 1076Right-handed alpha
Helix 42
AE6
A
1078 1128Right-handed alpha
Helix 43
AE7
A
1136 1146Right-handed alpha
Helix 44
AE8
A
1146 1176Right-handed alpha
Helix 45
AE9
A
1250 1260Right-handed alpha
Helix 46
AF1
A
1279 1285Right-handed alpha
Helix 47
AF2
A
1301 1306Right-handed alpha
Helix 48
AF3
A
1312 1324Right-handed alpha
Helix 49
AF4
A
1326 1331Right-handed alpha
Helix 50
AF5
A
1350 1364Right-handed alpha
Helix 51
AF6
A
1373 1377Right-handed 310
Helix 52
AF7
A
1378 1393Right-handed alpha
Helix 53
AF8
A
1405 1410Right-handed 310
Helix 54
AF9
A
1427 1433Right-handed alpha
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There are 5 sheets in PDB entry 5UAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
440 443anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 569first strand
Strand 2
A
599 601parallel
Strand 3
A
452 456parallel
Strand 4
A
614 619parallel
Strand 5
A
622 627anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
539 540anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1287 1288first strand
Strand 2
A
1367 1370parallel
Strand 3
A
1397 1401parallel
Strand 4
A
1240 1244parallel
Strand 5
A
1413 1416parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1299 1300first strand
Strand 2
A
1339 1340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il